Detailed information NTG0919006

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: VNN28_RS08390
• Genome accession: NZ_CP141725
• Coordinates: 1731054..1731905 (-)
• Length: 283 a.a.
• NCBI ID: WP_338997400.1
• Uniprot ID: -
• Organism: Lactococcus formosensis strain M03102409 EE5d7
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1726054..1736905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN28_RS08375 (VNN28_08375)	-	1727012..1727233 (+)	222	WP_165714531.1	hypothetical protein	-
VNN28_RS08380 (VNN28_08380)	trmFO	1727308..1728651 (-)	1344	WP_338997399.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
VNN28_RS08385 (VNN28_08385)	topA	1728697..1730847 (-)	2151	WP_165711717.1	type I DNA topoisomerase	-
VNN28_RS08390 (VNN28_08390)	dprA	1731054..1731905 (-)	852	WP_338997400.1	DNA-processing protein DprA	Machinery gene
VNN28_RS08395 (VNN28_08395)	budA	1731992..1732690 (-)	699	WP_096368259.1	acetolactate decarboxylase	-
VNN28_RS08400 (VNN28_08400)	-	1732833..1734557 (-)	1725	WP_165713809.1	ABC transporter permease/substrate binding protein	-
VNN28_RS08405 (VNN28_08405)	-	1734550..1735752 (-)	1203	WP_338997401.1	glycine betaine/L-proline ABC transporter ATP-binding protein	-
VNN28_RS08410 (VNN28_08410)	-	1735957..1736577 (-)	621	WP_019291676.1	GntR family transcriptional regulator	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31959.10 Da
• Isoelectric Point: 9.9870

>NTDB_id=919006 VNN28_RS08390 WP_338997400.1 1731054..1731905(-) (dprA) [Lactococcus formosensis strain M03102409 EE5d7]
MIKNFEILRLKKAGMSNLGILKLIDYQRGHEAKLTLRQLARIAEIKAIPNFIENYKSQDVKRLRKLYKLFPSFSILDDIY
PEWLKEIYNPPALLFYQGNLKILNLPKLGFVGSRESSKEATKITHKLIEELKQNFVIVSGLARGVDTSSHVAAVKQKTPT
IAVIGNGLDISYPKENRKLQEYLATHELVLSEYLAGEQPLKFHFPERNRIIAGLSRGIVVVEAKQRSGSLITSRYALEGN
REVFAVPGDILNRNASGCNQLIQQGAAKLVTHGQDILDEFYLD

Nucleotide

• Length: 852 bp

>NTDB_id=919006 VNN28_RS08390 WP_338997400.1 1731054..1731905(-) (dprA) [Lactococcus formosensis strain M03102409 EE5d7]
ATGATTAAAAACTTTGAAATATTACGTTTGAAAAAAGCAGGAATGTCTAATTTAGGGATCTTGAAACTGATTGATTATCA
GAGGGGGCATGAAGCAAAACTCACTCTACGCCAGTTAGCGCGGATTGCAGAAATTAAAGCTATCCCAAATTTTATTGAGA
ATTATAAAAGTCAGGATGTTAAACGGCTACGAAAGCTATATAAGCTCTTCCCTTCGTTCTCCATTTTAGATGATATTTAT
CCAGAGTGGTTAAAAGAAATATATAATCCACCGGCACTCCTTTTTTACCAAGGAAATCTAAAAATACTTAATCTACCTAA
ACTTGGATTTGTAGGTAGCCGTGAAAGCTCCAAAGAAGCAACCAAAATTACGCATAAGCTTATTGAGGAACTAAAACAAA
ACTTTGTTATTGTGAGCGGATTGGCACGCGGTGTTGACACTTCTAGCCATGTAGCAGCTGTAAAGCAAAAAACTCCAACT
ATTGCTGTTATAGGTAATGGTTTAGATATTTCTTATCCAAAAGAAAATCGTAAATTACAAGAATATTTAGCAACACACGA
ATTAGTTTTATCAGAGTACCTTGCAGGAGAGCAACCGCTCAAGTTTCATTTCCCAGAGAGGAATAGAATCATTGCTGGTC
TTTCACGTGGGATTGTCGTTGTTGAAGCAAAACAACGTAGTGGAAGTCTCATTACAAGTCGATATGCATTAGAAGGGAAT
AGAGAGGTATTCGCTGTACCTGGAGATATTTTGAATCGAAATGCCTCAGGCTGTAATCAATTGATTCAACAGGGAGCTGC
TAAGCTTGTCACACACGGTCAAGATATTTTAGATGAATTTTATTTAGATTAA

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (75-271)

• DNA processing protein A sterile alpha motif domain (SAM_DprA) (2-63)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Lactococcus lactis subsp. cremoris KW2	63.929	98.94	0.633
dprA	Streptococcus mutans UA159	55.914	98.587	0.551
dprA/cilB/dalA	Streptococcus pneumoniae D39	54.48	98.587	0.537
dprA/cilB/dalA	Streptococcus pneumoniae R6	54.48	98.587	0.537
dprA/cilB/dalA	Streptococcus mitis SK321	54.48	98.587	0.537
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	54.48	98.587	0.537
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	54.48	98.587	0.537
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	53.763	98.587	0.53
dprA	Haemophilus influenzae Rd KW20	39.416	96.82	0.382
dprA	Latilactobacillus sakei subsp. sakei 23K	36.806	100	0.375