Detailed information NTG0918914

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: VNN39_RS08390
• Genome accession: NZ_CP141721
• Coordinates: 1731048..1731899 (-)
• Length: 283 a.a.
• NCBI ID: WP_338997400.1
• Uniprot ID: -
• Organism: Lactococcus formosensis strain M04020401 EE5e5
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1726048..1736899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN39_RS08375 (VNN39_08375)	-	1727006..1727227 (+)	222	WP_165714531.1	hypothetical protein	-
VNN39_RS08380 (VNN39_08380)	trmFO	1727302..1728645 (-)	1344	WP_339007037.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
VNN39_RS08385 (VNN39_08385)	topA	1728691..1730841 (-)	2151	WP_165711717.1	type I DNA topoisomerase	-
VNN39_RS08390 (VNN39_08390)	dprA	1731048..1731899 (-)	852	WP_338997400.1	DNA-processing protein DprA	Machinery gene
VNN39_RS08395 (VNN39_08395)	budA	1731986..1732684 (-)	699	WP_096368259.1	acetolactate decarboxylase	-
VNN39_RS08400 (VNN39_08400)	-	1732827..1734551 (-)	1725	WP_165713809.1	ABC transporter permease/substrate binding protein	-
VNN39_RS08405 (VNN39_08405)	-	1734544..1735746 (-)	1203	WP_338997401.1	glycine betaine/L-proline ABC transporter ATP-binding protein	-
VNN39_RS08410 (VNN39_08410)	-	1735951..1736571 (-)	621	WP_019291676.1	GntR family transcriptional regulator	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 31959.10 Da
• Isoelectric Point: 9.9870

>NTDB_id=918914 VNN39_RS08390 WP_338997400.1 1731048..1731899(-) (dprA) [Lactococcus formosensis strain M04020401 EE5e5]
MIKNFEILRLKKAGMSNLGILKLIDYQRGHEAKLTLRQLARIAEIKAIPNFIENYKSQDVKRLRKLYKLFPSFSILDDIY
PEWLKEIYNPPALLFYQGNLKILNLPKLGFVGSRESSKEATKITHKLIEELKQNFVIVSGLARGVDTSSHVAAVKQKTPT
IAVIGNGLDISYPKENRKLQEYLATHELVLSEYLAGEQPLKFHFPERNRIIAGLSRGIVVVEAKQRSGSLITSRYALEGN
REVFAVPGDILNRNASGCNQLIQQGAAKLVTHGQDILDEFYLD

Nucleotide

• Length: 852 bp

>NTDB_id=918914 VNN39_RS08390 WP_338997400.1 1731048..1731899(-) (dprA) [Lactococcus formosensis strain M04020401 EE5e5]
ATGATTAAAAACTTTGAAATATTACGTTTGAAAAAAGCAGGAATGTCTAATTTAGGGATCTTGAAACTGATTGATTATCA
GAGGGGGCATGAAGCAAAACTCACTCTACGCCAGTTAGCGCGGATTGCAGAAATTAAAGCTATCCCAAATTTTATTGAGA
ATTATAAAAGTCAGGATGTTAAACGGCTACGAAAGCTATATAAGCTCTTCCCTTCGTTCTCCATTTTAGATGATATTTAT
CCAGAGTGGTTAAAAGAAATATATAATCCACCGGCACTCCTTTTTTACCAAGGAAATCTAAAAATACTTAATCTACCTAA
ACTTGGATTTGTAGGTAGCCGTGAAAGCTCCAAAGAAGCAACCAAAATTACGCATAAGCTTATTGAGGAACTAAAACAAA
ACTTTGTTATTGTGAGCGGATTGGCACGCGGTGTTGACACTTCTAGCCATGTAGCAGCTGTAAAGCAAAAAACTCCAACT
ATTGCTGTTATAGGTAATGGTTTAGATATTTCTTATCCAAAAGAAAATCGTAAATTACAAGAATATTTAGCAACACACGA
ATTAGTTTTATCAGAGTACCTTGCAGGAGAGCAACCGCTCAAGTTTCATTTCCCAGAGAGGAATAGAATCATTGCTGGTC
TTTCACGTGGGATTGTCGTTGTTGAAGCAAAACAACGTAGTGGAAGTCTCATTACAAGTCGATATGCATTAGAAGGGAAT
AGAGAGGTATTCGCTGTACCTGGAGATATTTTGAATCGAAATGCCTCAGGCTGTAATCAATTGATTCAACAGGGAGCTGC
TAAGCTTGTCACACACGGTCAAGATATTTTAGATGAATTTTATTTAGATTAA

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (75-271)

• DNA processing protein A sterile alpha motif domain (SAM_DprA) (2-63)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Lactococcus lactis subsp. cremoris KW2	63.929	98.94	0.633
dprA	Streptococcus mutans UA159	55.914	98.587	0.551
dprA/cilB/dalA	Streptococcus pneumoniae D39	54.48	98.587	0.537
dprA/cilB/dalA	Streptococcus pneumoniae R6	54.48	98.587	0.537
dprA/cilB/dalA	Streptococcus mitis SK321	54.48	98.587	0.537
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	54.48	98.587	0.537
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	54.48	98.587	0.537
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	53.763	98.587	0.53
dprA	Haemophilus influenzae Rd KW20	39.416	96.82	0.382
dprA	Latilactobacillus sakei subsp. sakei 23K	36.806	100	0.375