NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	VNN39_RS01700	Genome accession	NZ_CP141721
Coordinates	348298..348897 (+)	Length	199 a.a.
NCBI ID	WP_338997753.1	Uniprot ID	-
Organism	Lactococcus formosensis strain M04020401 EE5e5
Function	degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 343298..353897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN39_RS01665 (VNN39_01665)	-	343459..344229 (-)	771	WP_003134031.1	ABC transporter permease	-
VNN39_RS01670 (VNN39_01670)	-	344222..345145 (-)	924	WP_017368817.1	ABC transporter ATP-binding protein	-
VNN39_RS01675 (VNN39_01675)	rnmV	345142..345687 (-)	546	WP_338997751.1	ribonuclease M5	-
VNN39_RS01680 (VNN39_01680)	-	345684..346457 (-)	774	WP_338997752.1	TatD family hydrolase	-
VNN39_RS01685 (VNN39_01685)	spx	346593..346991 (-)	399	WP_003134024.1	transcriptional regulator Spx	-
VNN39_RS01690 (VNN39_01690)	-	347152..347682 (-)	531	WP_017368814.1	hypothetical protein	-
VNN39_RS01695 (VNN39_01695)	-	347742..348119 (-)	378	WP_017368813.1	VOC family protein	-
VNN39_RS01700 (VNN39_01700)	clpP	348298..348897 (+)	600	WP_338997753.1	ATP-dependent Clp protease proteolytic subunit	Regulator
VNN39_RS01705 (VNN39_01705)	-	348998..352417 (-)	3420	WP_339007177.1	pyruvate carboxylase	-
VNN39_RS01710 (VNN39_01710)	-	352618..353841 (-)	1224	WP_165711446.1	FtsW/RodA/SpoVE family cell cycle protein	-

Sequence

Protein

Download Length: 199 a.a. Molecular weight: 21813.93 Da Isoelectric Point: 4.6103

                                >NTDB_id=918882 VNN39_RS01700 WP_338997753.1 348298..348897(+) (clpP) [Lactococcus formosensis strain M04020401 EE5e5]

MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD

TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIYQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN

SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide

Download Length: 600 bp

                                >NTDB_id=918882 VNN39_RS01700 WP_338997753.1 348298..348897(+) (clpP) [Lactococcus formosensis strain M04020401 EE5e5]

ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGCGCATATGACATTTACAGCCGTCTACTGAA

AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG

CCCAAGACAGCACAAAGGACATTTACCTCTATATTAATACACCTGGTGGTTCTGTATCTGCTGGACTTGCGATTGTAGAT

ACCATGAACTTCATCAAGTCTGATGTTCAAACAATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG

TGGTACAAAAGGTAAACGTTTCATGTTGCCACATGCAGAATACATGATTTACCAACCTATGGGAGGTACTGGTGGCGGCA

CACAGCAAACAGATATGGCTATTGCTGCGGAACATTTGCTTAAAACACGTCGTACTTTAGAAAAGATTTTGGCAGAAAAC

TCTGGTCAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGATAACTGGATGACTGCACAAGAAACATTAGACTATGG

TTTCATTGATGAAATCATGGAAGCCAACAGCTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pneumoniae Rx1	89.286	98.492	0.879
clpP	Streptococcus pneumoniae D39	89.286	98.492	0.879
clpP	Streptococcus pneumoniae R6	89.286	98.492	0.879
clpP	Streptococcus pneumoniae TIGR4	89.286	98.492	0.879
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.437	100	0.874
clpP	Lactococcus lactis subsp. cremoris KW2	86.935	100	0.869
clpP	Streptococcus thermophilus LMG 18311	87.245	98.492	0.859
clpP	Streptococcus thermophilus LMD-9	87.245	98.492	0.859
clpP	Streptococcus pyogenes JRS4	83.673	98.492	0.824
clpP	Streptococcus pyogenes MGAS315	83.673	98.492	0.824
clpP	Streptococcus mutans UA159	83.673	98.492	0.824
clpP	Bacillus subtilis subsp. subtilis str. 168	57.895	95.477	0.553
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.477	96.985	0.548

Detailed information NTG0918882