Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   VNN36_RS02015 Genome accession   NZ_CP141717
Coordinates   401853..402452 (+) Length   199 a.a.
NCBI ID   WP_003134020.1    Uniprot ID   -
Organism   Lactococcus garvieae strain R22-8     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 396853..407452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN36_RS01980 (VNN36_01980) - 397010..397780 (-) 771 WP_165705596.1 ABC transporter permease -
  VNN36_RS01985 (VNN36_01985) - 397773..398699 (-) 927 WP_311798570.1 ABC transporter ATP-binding protein -
  VNN36_RS01990 (VNN36_01990) rnmV 398696..399241 (-) 546 WP_042217356.1 ribonuclease M5 -
  VNN36_RS01995 (VNN36_01995) - 399241..400011 (-) 771 WP_339013763.1 TatD family hydrolase -
  VNN36_RS02000 (VNN36_02000) spx 400148..400546 (-) 399 WP_003134024.1 transcriptional regulator Spx -
  VNN36_RS02005 (VNN36_02005) - 400709..401239 (-) 531 WP_339013765.1 hypothetical protein -
  VNN36_RS02010 (VNN36_02010) - 401299..401676 (-) 378 WP_042217360.1 VOC family protein -
  VNN36_RS02015 (VNN36_02015) clpP 401853..402452 (+) 600 WP_003134020.1 ATP-dependent Clp protease proteolytic subunit Regulator
  VNN36_RS02020 (VNN36_02020) - 402547..405966 (-) 3420 WP_339013766.1 pyruvate carboxylase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21787.90 Da        Isoelectric Point: 4.7242

>NTDB_id=918748 VNN36_RS02015 WP_003134020.1 401853..402452(+) (clpP) [Lactococcus garvieae strain R22-8]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN
SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=918748 VNN36_RS02015 WP_003134020.1 401853..402452(+) (clpP) [Lactococcus garvieae strain R22-8]
ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGTGCATATGACATTTATAGCCGTCTACTGAA
AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG
CCCAAGACAGCACAAAGGACATTTACCTCTACATTAACACACCTGGTGGTTCTGTTTCTGCTGGTCTTGCAATTGTCGAT
ACTATGAACTTCATCAAATCTGATGTTCAAACCATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG
TGGTACAAAAGGCAAACGTTTCATGTTGCCACATGCGGAATACATGATTCACCAACCTATGGGCGGTACTGGTGGTGGTA
CACAACAAACAGACATGGCTATCGCTGCGGAACATTTGCTCAAAACACGTCGTACTTTAGAAAAGATCTTGGCCGAAAAC
TCTGGACAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGACAACTGGATGACAGCCCAAGAAACATTAGATTATGG
TTTCATTGATGAAATCATGGAAGCCAACAGCTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

89.796

98.492

0.884
  clpP Streptococcus pneumoniae D39

89.796

98.492

0.884
  clpP Streptococcus pneumoniae R6

89.796

98.492

0.884
  clpP Streptococcus pneumoniae TIGR4

89.796

98.492

0.884
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.94

100

0.879
  clpP Lactococcus lactis subsp. cremoris KW2

87.437

100

0.874
  clpP Streptococcus thermophilus LMG 18311

87.755

98.492

0.864
  clpP Streptococcus thermophilus LMD-9

87.755

98.492

0.864
  clpP Streptococcus pyogenes JRS4

84.184

98.492

0.829
  clpP Streptococcus pyogenes MGAS315

84.184

98.492

0.829
  clpP Streptococcus mutans UA159

84.184

98.492

0.829
  clpP Bacillus subtilis subsp. subtilis str. 168

58.421

95.477

0.558
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553