Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   VNN41_RS09090 Genome accession   NZ_CP141713
Coordinates   1786510..1787109 (-) Length   199 a.a.
NCBI ID   WP_003134020.1    Uniprot ID   -
Organism   Lactococcus garvieae strain VC11     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1781510..1792109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN41_RS09085 (VNN41_09075) - 1782981..1786400 (+) 3420 WP_407350276.1 pyruvate carboxylase -
  VNN41_RS09090 (VNN41_09080) clpP 1786510..1787109 (-) 600 WP_003134020.1 ATP-dependent Clp protease proteolytic subunit Regulator
  VNN41_RS09095 (VNN41_09085) - 1787286..1787663 (+) 378 WP_042217360.1 VOC family protein -
  VNN41_RS09100 (VNN41_09090) - 1787723..1788253 (+) 531 WP_003134023.1 hypothetical protein -
  VNN41_RS09105 (VNN41_09095) spx 1788416..1788814 (+) 399 WP_003134024.1 transcriptional regulator Spx -
  VNN41_RS09110 (VNN41_09100) - 1788951..1789721 (+) 771 WP_023889792.1 TatD family hydrolase -
  VNN41_RS09115 (VNN41_09105) rnmV 1789721..1790266 (+) 546 WP_265150210.1 ribonuclease M5 -
  VNN41_RS09120 (VNN41_09110) - 1790263..1791189 (+) 927 WP_003134028.1 ABC transporter ATP-binding protein -
  VNN41_RS09125 (VNN41_09115) - 1791182..1791952 (+) 771 WP_003134031.1 ABC transporter permease -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21787.90 Da        Isoelectric Point: 4.7242

>NTDB_id=918725 VNN41_RS09090 WP_003134020.1 1786510..1787109(-) (clpP) [Lactococcus garvieae strain VC11]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN
SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=918725 VNN41_RS09090 WP_003134020.1 1786510..1787109(-) (clpP) [Lactococcus garvieae strain VC11]
ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGCGCATATGACATTTATAGCCGTCTACTGAA
AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG
CCCAAGACAGCACAAAGGACATTTACCTCTACATTAACACACCTGGTGGTTCTGTTTCTGCTGGTCTTGCAATTGTCGAT
ACTATGAACTTCATCAAATCTGATGTTCAAACCATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG
TGGTACAAAAGGCAAACGTTTCATGTTGCCACATGCGGAATACATGATTCACCAACCTATGGGCGGTACTGGTGGTGGTA
CACAACAAACAGACATGGCTATTGCTGCGGAACATTTGCTCAAAACACGTCGTACTTTAGAAAAGATCTTGGCCGAAAAC
TCTGGACAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGACAACTGGATGACAGCCCAAGAAACATTAGATTATGG
TTTCATTGATGAAATCATGGAAGCCAACAGCTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

89.796

98.492

0.884
  clpP Streptococcus pneumoniae D39

89.796

98.492

0.884
  clpP Streptococcus pneumoniae R6

89.796

98.492

0.884
  clpP Streptococcus pneumoniae TIGR4

89.796

98.492

0.884
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.94

100

0.879
  clpP Lactococcus lactis subsp. cremoris KW2

87.437

100

0.874
  clpP Streptococcus thermophilus LMG 18311

87.755

98.492

0.864
  clpP Streptococcus thermophilus LMD-9

87.755

98.492

0.864
  clpP Streptococcus pyogenes JRS4

84.184

98.492

0.829
  clpP Streptococcus pyogenes MGAS315

84.184

98.492

0.829
  clpP Streptococcus mutans UA159

84.184

98.492

0.829
  clpP Bacillus subtilis subsp. subtilis str. 168

58.421

95.477

0.558
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553