NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	VNN37_RS01935	Genome accession	NZ_CP141707
Coordinates	388903..389502 (+)	Length	199 a.a.
NCBI ID	WP_003134020.1	Uniprot ID	-
Organism	Lactococcus garvieae strain M21102102
Function	degradation of ComX; degradation of ComW (predicted from homology) Competence regulation

Genomic Context

Location: 383903..394502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN37_RS01900 (VNN37_01900)	-	384060..384830 (-)	771	WP_165705596.1	ABC transporter permease	-
VNN37_RS01905 (VNN37_01905)	-	384823..385749 (-)	927	WP_339000440.1	ABC transporter ATP-binding protein	-
VNN37_RS01910 (VNN37_01910)	rnmV	385746..386291 (-)	546	WP_042217356.1	ribonuclease M5	-
VNN37_RS01915 (VNN37_01915)	-	386291..387061 (-)	771	WP_023889792.1	TatD family hydrolase	-
VNN37_RS01920 (VNN37_01920)	spx	387198..387596 (-)	399	WP_003134024.1	transcriptional regulator Spx	-
VNN37_RS01925 (VNN37_01925)	-	387759..388289 (-)	531	WP_003134023.1	hypothetical protein	-
VNN37_RS01930 (VNN37_01930)	-	388349..388726 (-)	378	WP_042217360.1	VOC family protein	-
VNN37_RS01935 (VNN37_01935)	clpP	388903..389502 (+)	600	WP_003134020.1	ATP-dependent Clp protease proteolytic subunit	Regulator
VNN37_RS01940 (VNN37_01940)	-	389606..393025 (-)	3420	WP_339000443.1	pyruvate carboxylase	-
VNN37_RS01945 (VNN37_01945)	-	393220..394443 (-)	1224	WP_003134018.1	FtsW/RodA/SpoVE family cell cycle protein	-

Sequence

Protein

Download Length: 199 a.a. Molecular weight: 21787.90 Da Isoelectric Point: 4.7242

                                >NTDB_id=918614 VNN37_RS01935 WP_003134020.1 388903..389502(+) (clpP) [Lactococcus garvieae strain M21102102]

MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD

TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN

SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide

Download Length: 600 bp

                                >NTDB_id=918614 VNN37_RS01935 WP_003134020.1 388903..389502(+) (clpP) [Lactococcus garvieae strain M21102102]

ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGTGCATATGACATTTATAGCCGTCTACTGAA

AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG

CCCAAGACAGCACAAAGGACATTTACCTCTACATTAACACACCTGGTGGTTCTGTTTCTGCTGGACTTGCAATTGTCGAT

ACTATGAACTTCATCAAATCTGATGTTCAAACCATCGTTATGGGTATCGCTGCATCTATGGGTACAATCATTGCTTCTAG

TGGTACAAAAGGCAAACGTTTCATGTTGCCACATGCGGAATACATGATTCACCAACCTATGGGCGGTACTGGTGGTGGTA

CACAACAAACAGACATGGCTATCGCTGCGGAACATTTGCTCAAAACACGTCGTACTTTAGAAAAGATCTTGGCCGAAAAC

TCTGGACAATCTATGGAAAAAGTACATGCCGATGCAGAACGTGACAACTGGATGACAGCACAAGAAACATTAGATTATGG

TTTCATTGATGAAATCATGGAAGCCAATAGCTTGAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pneumoniae Rx1	89.796	98.492	0.884
clpP	Streptococcus pneumoniae D39	89.796	98.492	0.884
clpP	Streptococcus pneumoniae R6	89.796	98.492	0.884
clpP	Streptococcus pneumoniae TIGR4	89.796	98.492	0.884
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	87.94	100	0.879
clpP	Lactococcus lactis subsp. cremoris KW2	87.437	100	0.874
clpP	Streptococcus thermophilus LMG 18311	87.755	98.492	0.864
clpP	Streptococcus thermophilus LMD-9	87.755	98.492	0.864
clpP	Streptococcus pyogenes JRS4	84.184	98.492	0.829
clpP	Streptococcus pyogenes MGAS315	84.184	98.492	0.829
clpP	Streptococcus mutans UA159	84.184	98.492	0.829
clpP	Bacillus subtilis subsp. subtilis str. 168	58.421	95.477	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	96.985	0.553

Detailed information NTG0918614