Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   VNN32_RS05945 Genome accession   NZ_CP141703
Coordinates   1129639..1130238 (-) Length   199 a.a.
NCBI ID   WP_003134020.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-74 AL-1     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124639..1135238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN32_RS05940 (VNN32_05935) - 1126174..1129593 (+) 3420 WP_019292660.1 pyruvate carboxylase -
  VNN32_RS05945 (VNN32_05940) clpP 1129639..1130238 (-) 600 WP_003134020.1 ATP-dependent Clp protease proteolytic subunit Regulator
  VNN32_RS05950 (VNN32_05945) - 1130418..1130795 (+) 378 WP_019292659.1 VOC family protein -
  VNN32_RS05955 (VNN32_05950) - 1130855..1131385 (+) 531 WP_019292658.1 hypothetical protein -
  VNN32_RS05960 (VNN32_05955) spx 1131547..1131945 (+) 399 WP_003134024.1 transcriptional regulator Spx -
  VNN32_RS05965 (VNN32_05960) - 1132081..1132854 (+) 774 WP_046401363.1 TatD family hydrolase -
  VNN32_RS05970 (VNN32_05965) rnmV 1132851..1133396 (+) 546 WP_019292656.1 ribonuclease M5 -
  VNN32_RS05975 (VNN32_05970) - 1133393..1134316 (+) 924 WP_338975439.1 ABC transporter ATP-binding protein -
  VNN32_RS05980 (VNN32_05975) - 1134309..1135079 (+) 771 WP_019292654.1 ABC transporter permease -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21787.90 Da        Isoelectric Point: 4.7242

>NTDB_id=918590 VNN32_RS05945 WP_003134020.1 1129639..1130238(-) (clpP) [Lactococcus petauri strain R21-74 AL-1]
MGYLVPTVIEQSSRGERAYDIYSRLLKDRIIMLTGQVEDGMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAGLAIVD
TMNFIKSDVQTIVMGIAASMGTIIASSGTKGKRFMLPHAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRRTLEKILAEN
SGQSMEKVHADAERDNWMTAQETLDYGFIDEIMEANSLK

Nucleotide


Download         Length: 600 bp        

>NTDB_id=918590 VNN32_RS05945 WP_003134020.1 1129639..1130238(-) (clpP) [Lactococcus petauri strain R21-74 AL-1]
ATGGGATATTTAGTACCTACTGTCATCGAGCAATCAAGCCGTGGTGAACGCGCATATGACATTTATAGCCGTCTACTGAA
AGACCGTATCATCATGTTGACAGGCCAAGTTGAGGATGGTATGGCCAACTCAATCATCGCACAACTCCTCTTCTTGGATG
CCCAAGACAGCACAAAGGATATTTACCTCTACATTAACACACCTGGTGGTTCTGTTTCTGCTGGACTTGCAATTGTTGAT
ACTATGAACTTCATCAAATCTGACGTTCAAACAATTGTTATGGGTATTGCTGCATCTATGGGTACAATCATTGCTTCTAG
TGGTACAAAAGGCAAACGTTTCATGTTGCCGCATGCTGAATACATGATCCACCAACCTATGGGCGGTACTGGTGGTGGTA
CACAACAAACCGATATGGCTATCGCAGCAGAACACTTGCTCAAAACACGTCGTACTTTAGAAAAGATTTTGGCCGAAAAC
TCTGGTCAGTCTATGGAAAAAGTACATGCTGATGCAGAACGTGACAACTGGATGACAGCCCAAGAAACATTGGATTATGG
TTTCATTGACGAAATCATGGAAGCCAACAGCTTAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

89.796

98.492

0.884
  clpP Streptococcus pneumoniae D39

89.796

98.492

0.884
  clpP Streptococcus pneumoniae R6

89.796

98.492

0.884
  clpP Streptococcus pneumoniae TIGR4

89.796

98.492

0.884
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.94

100

0.879
  clpP Lactococcus lactis subsp. cremoris KW2

87.437

100

0.874
  clpP Streptococcus thermophilus LMG 18311

87.755

98.492

0.864
  clpP Streptococcus thermophilus LMD-9

87.755

98.492

0.864
  clpP Streptococcus pyogenes JRS4

84.184

98.492

0.829
  clpP Streptococcus pyogenes MGAS315

84.184

98.492

0.829
  clpP Streptococcus mutans UA159

84.184

98.492

0.829
  clpP Bacillus subtilis subsp. subtilis str. 168

58.421

95.477

0.558
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

96.985

0.553