Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   ABZO29_RS26105 Genome accession   NZ_CP160403
Coordinates   5663890..5664264 (+) Length   124 a.a.
NCBI ID   WP_367322609.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS ZL42     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 5658890..5669264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZO29_RS26085 (ABZO29_26085) - 5659473..5662001 (-) 2529 WP_367322606.1 ABC transporter permease -
  ABZO29_RS26090 (ABZO29_26090) - 5662040..5662810 (-) 771 WP_367322607.1 ABC transporter ATP-binding protein -
  ABZO29_RS26100 (ABZO29_26100) - 5663516..5663890 (+) 375 WP_367322608.1 response regulator -
  ABZO29_RS26105 (ABZO29_26105) chiS 5663890..5664264 (+) 375 WP_367322609.1 response regulator transcription factor Regulator
  ABZO29_RS26110 (ABZO29_26110) - 5664261..5665361 (+) 1101 WP_367322610.1 HEAT repeat domain-containing protein -
  ABZO29_RS26115 (ABZO29_26115) - 5665408..5666898 (+) 1491 WP_367322611.1 glycosyltransferase family 2 protein -
  ABZO29_RS26120 (ABZO29_26120) - 5666895..5668997 (+) 2103 WP_367322612.1 ATP-binding protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13578.58 Da        Isoelectric Point: 4.5082

>NTDB_id=918364 ABZO29_RS26105 WP_367322609.1 5663890..5664264(+) (chiS) [Streptomyces sp. HUAS ZL42]
MARVLIADDDADIRDLVAFKLTQSGHQVTAVEDGMAALRAVREELPDLALLDIRMPGMSGLDVCRELRSEPETATLPVIM
ITARSQEGDVEVGFAAGADDYIIKPFSPRELSSRVQAVLTRVRR

Nucleotide


Download         Length: 375 bp        

>NTDB_id=918364 ABZO29_RS26105 WP_367322609.1 5663890..5664264(+) (chiS) [Streptomyces sp. HUAS ZL42]
ATGGCTCGTGTCCTGATAGCCGACGACGACGCCGACATACGGGACCTGGTCGCGTTCAAGCTGACCCAGAGCGGCCACCA
GGTCACGGCCGTGGAGGACGGCATGGCCGCGCTGCGAGCCGTGCGCGAGGAGCTGCCGGACCTGGCGCTGCTCGACATAC
GGATGCCCGGGATGTCGGGCCTGGACGTCTGCCGGGAGCTCCGGTCGGAGCCGGAGACCGCGACACTCCCCGTGATCATG
ATCACCGCACGGTCCCAGGAAGGGGACGTCGAGGTCGGGTTCGCGGCGGGTGCCGACGACTACATCATCAAGCCGTTCAG
CCCGCGGGAGCTGTCCAGCCGGGTCCAGGCGGTGCTGACCAGGGTCCGACGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

47.458

95.161

0.452
  vicR Streptococcus mutans UA159

42.149

97.581

0.411
  pilH Synechocystis sp. PCC 6803

41.176

95.968

0.395
  scnR Streptococcus mutans UA159

40

96.774

0.387
  micA Streptococcus pneumoniae Cp1015

39.669

97.581

0.387
  ciaR Streptococcus pneumoniae Rx1

37.19

97.581

0.363
  ciaR Streptococcus pneumoniae D39

37.19

97.581

0.363
  ciaR Streptococcus pneumoniae R6

37.19

97.581

0.363
  ciaR Streptococcus pneumoniae TIGR4

37.19

97.581

0.363