Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABXJ52_RS33705 Genome accession   NZ_CP160402
Coordinates   7501759..7502394 (-) Length   211 a.a.
NCBI ID   WP_367047417.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7496759..7507394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS33675 (ABXJ52_33675) - 7497582..7498049 (+) 468 WP_367047397.1 ATP-binding protein -
  ABXJ52_RS33680 (ABXJ52_33680) - 7498038..7498949 (-) 912 WP_367047400.1 LysR family transcriptional regulator -
  ABXJ52_RS33685 (ABXJ52_33685) - 7499079..7499708 (+) 630 WP_367047404.1 LysE family translocator -
  ABXJ52_RS33690 (ABXJ52_33690) - 7499686..7500252 (-) 567 WP_367047407.1 DUF6328 family protein -
  ABXJ52_RS33695 (ABXJ52_33695) - 7500439..7500912 (-) 474 WP_367047410.1 C40 family peptidase -
  ABXJ52_RS33700 (ABXJ52_33700) - 7501443..7501751 (-) 309 WP_367047413.1 hypothetical protein -
  ABXJ52_RS33705 (ABXJ52_33705) clpP 7501759..7502394 (-) 636 WP_367047417.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABXJ52_RS33710 (ABXJ52_33710) - 7502650..7503114 (+) 465 WP_367047419.1 phage holin family protein -
  ABXJ52_RS33715 (ABXJ52_33715) - 7503181..7503546 (+) 366 WP_367049454.1 gas vesicle protein -
  ABXJ52_RS33720 (ABXJ52_33720) - 7503615..7504040 (+) 426 WP_367047422.1 gas vesicle structural protein GvpA -
  ABXJ52_RS33725 (ABXJ52_33725) - 7504037..7504816 (+) 780 WP_367047425.1 GvpL/GvpF family gas vesicle protein -
  ABXJ52_RS33730 (ABXJ52_33730) - 7504820..7505083 (+) 264 WP_367047428.1 gas vesicle protein GvpG -
  ABXJ52_RS33735 (ABXJ52_33735) - 7505080..7505769 (+) 690 WP_367047430.1 DNA primase -
  ABXJ52_RS33740 (ABXJ52_33740) - 7505762..7506925 (+) 1164 WP_367047432.1 SRPBCC family protein -
  ABXJ52_RS33745 (ABXJ52_33745) - 7506922..7507359 (+) 438 WP_367047434.1 gas vesicle protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22868.87 Da        Isoelectric Point: 5.6364

>NTDB_id=918309 ABXJ52_RS33705 WP_367047417.1 7501759..7502394(-) (clpP) [Streptomyces sp. Je 1-332]
MNRPSARYVLPEFTERTSTGQRTLDPYSKLLEERIVFLGTPIDDTSANDVMAQFMHLEYLAPDRDIALYINSPGGSFSAM
TAIYDTIQFVSCDVETTCLGQAASAAAVLLAAGTPGKRHALPGARVLIHQPSLAEPVHGQASDLAIQADELLRTRAQLEK
LLVQHTGRSAERVRADIERDKILSATEAVDYGLVDRIIASRKTSSGTKDAG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=918309 ABXJ52_RS33705 WP_367047417.1 7501759..7502394(-) (clpP) [Streptomyces sp. Je 1-332]
ATGAACCGACCGTCCGCCCGCTATGTCCTGCCCGAGTTCACCGAGCGCACGAGCACCGGGCAGCGGACCCTCGATCCGTA
CTCGAAGCTCCTCGAGGAGCGCATCGTCTTCCTGGGGACGCCGATCGACGACACGTCGGCCAACGACGTGATGGCGCAGT
TCATGCACCTCGAATACCTGGCGCCGGACCGCGACATCGCGCTCTACATCAACTCCCCCGGTGGTTCGTTCAGCGCGATG
ACCGCGATCTACGACACGATCCAGTTCGTCTCCTGCGACGTGGAGACGACATGCCTGGGGCAGGCCGCGTCGGCGGCGGC
GGTCCTGCTGGCCGCGGGCACCCCGGGCAAGCGACACGCGCTGCCCGGCGCCCGGGTTCTCATCCACCAGCCCTCACTGG
CCGAGCCGGTTCACGGTCAGGCCTCCGACCTGGCGATCCAGGCCGACGAACTCCTGCGCACCCGCGCACAACTGGAGAAG
CTGCTCGTCCAACACACGGGCCGAAGCGCGGAACGCGTCCGCGCCGACATCGAGCGGGACAAGATCCTCAGCGCGACCGA
GGCAGTCGACTACGGCCTGGTGGACCGCATCATCGCGAGCCGCAAGACGTCCTCGGGCACCAAGGACGCGGGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

46.842

90.047

0.422
  clpP Streptococcus pneumoniae Rx1

45.078

91.469

0.412
  clpP Streptococcus pneumoniae D39

45.078

91.469

0.412
  clpP Streptococcus pneumoniae TIGR4

45.078

91.469

0.412
  clpP Streptococcus pneumoniae R6

45.078

91.469

0.412
  clpP Streptococcus pyogenes JRS4

43.299

91.943

0.398
  clpP Streptococcus pyogenes MGAS315

43.299

91.943

0.398
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

44.444

89.573

0.398
  clpP Streptococcus thermophilus LMD-9

42.784

91.943

0.393
  clpP Streptococcus mutans UA159

42.784

91.943

0.393
  clpP Streptococcus thermophilus LMG 18311

42.784

91.943

0.393
  clpP Lactococcus lactis subsp. cremoris KW2

42.268

91.943

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.268

91.943

0.389