Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABXJ52_RS23150 Genome accession   NZ_CP160402
Coordinates   5068775..5069380 (-) Length   201 a.a.
NCBI ID   WP_367044570.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5063775..5074380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS23125 (ABXJ52_23125) - 5064709..5065767 (+) 1059 WP_367044562.1 NAD(P)-dependent alcohol dehydrogenase -
  ABXJ52_RS23130 (ABXJ52_23130) - 5065986..5066369 (+) 384 WP_367044563.1 VOC family protein -
  ABXJ52_RS23135 (ABXJ52_23135) - 5066366..5067160 (-) 795 WP_367044564.1 alpha/beta fold hydrolase -
  ABXJ52_RS23140 (ABXJ52_23140) - 5067204..5068190 (+) 987 WP_367044565.1 aminoglycoside phosphotransferase family protein -
  ABXJ52_RS23145 (ABXJ52_23145) - 5068307..5068765 (+) 459 WP_367044566.1 helix-turn-helix transcriptional regulator -
  ABXJ52_RS23150 (ABXJ52_23150) clpP 5068775..5069380 (-) 606 WP_367044570.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABXJ52_RS23155 (ABXJ52_23155) clpP 5069386..5070030 (-) 645 WP_367044571.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABXJ52_RS23160 (ABXJ52_23160) - 5070254..5071066 (+) 813 WP_367044572.1 MBL fold metallo-hydrolase -
  ABXJ52_RS23165 (ABXJ52_23165) - 5071217..5071768 (+) 552 WP_367044574.1 hypothetical protein -
  ABXJ52_RS23170 (ABXJ52_23170) - 5072075..5072422 (-) 348 WP_367044575.1 hypothetical protein -
  ABXJ52_RS23175 (ABXJ52_23175) - 5072723..5073844 (+) 1122 WP_367044576.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21674.53 Da        Isoelectric Point: 4.7242

>NTDB_id=918285 ABXJ52_RS23150 WP_367044570.1 5068775..5069380(-) (clpP) [Streptomyces sp. Je 1-332]
MSQYTIPTVVERTPQGERAYDVYSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSNPEREVAIYINSPGGSFTSLMAIY
DTMSFVSAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHSRVLLGQPASGGQQGTVSDLALQAKEMLRIRSQVEDVLSRH
SGHDVATLRADMDRDKVFTAEDAVAYGLADEVLSRRMLAAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=918285 ABXJ52_RS23150 WP_367044570.1 5068775..5069380(-) (clpP) [Streptomyces sp. Je 1-332]
ATGAGCCAGTACACGATTCCGACCGTCGTCGAGCGCACCCCCCAGGGCGAGCGTGCCTACGACGTCTACAGCCGCCTCCT
CTCGGAGCGGATCATCTTCCTCGGGACCGAGATCGACGACGGTGTGGCCAACGTCGTCATCGCGCAGCTGCTGCACCTGG
AGTCCTCGAACCCGGAGCGCGAGGTCGCCATCTACATCAACTCGCCCGGAGGATCGTTCACTTCGCTCATGGCCATCTAC
GACACCATGAGCTTCGTCAGCGCCCCGATCTCGACGTTCTGCGTCGGGCAGGCCGCTTCCACCGCCGCCGTGCTCCTCGC
CGGAGGCGACCCCGGTCGGCGGTTCGTCCTGGAGCACTCGCGCGTCCTGCTCGGGCAGCCCGCGAGCGGCGGGCAGCAGG
GCACCGTCTCCGACCTCGCTCTCCAGGCCAAGGAGATGCTGCGGATCCGCTCGCAGGTGGAGGACGTCCTGTCCCGGCAC
TCGGGACACGATGTCGCCACGCTGCGCGCGGACATGGACCGTGACAAGGTCTTCACCGCCGAGGACGCGGTGGCGTACGG
ACTCGCCGACGAGGTCCTCAGTCGGCGGATGCTCGCCGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.735

94.03

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.789

94.527

0.433
  clpP Lactococcus lactis subsp. cremoris KW2

38.776

97.512

0.378
  clpP Streptococcus mutans UA159

39.175

96.517

0.378
  clpP Streptococcus pyogenes JRS4

38.66

96.517

0.373
  clpP Streptococcus pyogenes MGAS315

38.66

96.517

0.373
  clpP Streptococcus pneumoniae R6

38.66

96.517

0.373
  clpP Streptococcus pneumoniae Rx1

38.66

96.517

0.373
  clpP Streptococcus pneumoniae D39

38.66

96.517

0.373
  clpP Streptococcus pneumoniae TIGR4

38.66

96.517

0.373
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

37.755

97.512

0.368