Detailed information NTG0917764

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: AAFM42_RS28875
• Genome accession: NZ_CP160329
• Coordinates: 5777377..5778012 (-)
• Length: 211 a.a.
• NCBI ID: WP_003238276.1
• Uniprot ID: A0A0R2ZNS5
• Organism: Pseudomonas fluorescens strain PFX1
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5772377..5783012

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFM42_RS28860 (AAFM42_28780)	-	5773380..5773652 (-)	273	WP_003174819.1	HU family DNA-binding protein	-
AAFM42_RS28865 (AAFM42_28785)	lon	5773653..5776049 (-)	2397	WP_053256952.1	endopeptidase La	-
AAFM42_RS28870 (AAFM42_28790)	clpX	5776084..5777367 (-)	1284	WP_017136464.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AAFM42_RS28875 (AAFM42_28795)	clpP	5777377..5778012 (-)	636	WP_003238276.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AAFM42_RS28880 (AAFM42_28800)	tig	5778075..5779385 (-)	1311	WP_017136463.1	trigger factor	-
AAFM42_RS28885 (AAFM42_28805)	-	5779384..5779692 (+)	309	WP_394546414.1	hypothetical protein	-
AAFM42_RS28905 (AAFM42_28825)	folD	5780151..5781005 (+)	855	WP_053256953.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-
AAFM42_RS28910 (AAFM42_28830)	pbpG	5781018..5781941 (+)	924	WP_053256954.1	D-alanyl-D-alanine endopeptidase	-
AAFM42_RS28915 (AAFM42_28835)	-	5781942..5782604 (-)	663	WP_053256955.1	peptidase C39 family protein	-
AAFM42_RS28920 (AAFM42_28840)	-	5782686..5782847 (+)	162	WP_167422771.1	hypothetical protein	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 23389.79 Da
• Isoelectric Point: 5.6333

>NTDB_id=917764 AAFM42_RS28875 WP_003238276.1 5777377..5778012(-) (clpP) [Pseudomonas fluorescens strain PFX1]
MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEIL
FIRERLNTLMAKHSGHTLEEIERDTNRDNFMSAEAARAYGLIDAVIEKRPA

Nucleotide

• Length: 636 bp

>NTDB_id=917764 AAFM42_RS28875 WP_003238276.1 5777377..5778012(-) (clpP) [Pseudomonas fluorescens strain PFX1]
ATGTTCCGTAATTCCTATATTCAGCAGAACTCTGATATCCAGGCCGCTGGCGGCCTGGTCCCGATGGTTGTCGAGCAATC
TGCTCGTGGCGAACGCGCCTATGACATCTACTCGCGCCTGCTCAAGGAACGAGTGATTTTTCTGGTCGGCCCTGTAGAGG
ACTACATGGCTAACCTGATTTGTGCGCAACTGCTGTTCCTTGAAGCGGAAAACCCGGACAAGGACATCCATCTTTACATT
AACTCTCCGGGTGGCTCGGTGACGGCGGGTATGTCGATCTACGACACCATGCAGTTCATCAAGCCAAACGTGTCGACCAC
TTGCATCGGCCAGGCCTGCAGCATGGGCGCTTTCCTGCTGACCGCAGGTGCCGAGGGCAAGCGTTTCTGCCTGCCTAACT
CGCGCGTGATGATTCACCAGCCACTGGGCGGCTTCCAGGGCCAGGCGTCGGATATCGAAATTCACGCCAAGGAAATCCTG
TTTATTCGTGAGCGCCTCAATACATTGATGGCCAAGCACAGCGGGCATACCCTGGAAGAAATCGAGCGTGACACCAATCG
CGACAACTTTATGAGCGCGGAAGCTGCGCGTGCGTATGGGTTGATCGACGCGGTGATCGAAAAGCGCCCCGCTTAA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (29-208)

3D structure

• AlphaFold DB: A0A0R2ZNS5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.553	89.1	0.602
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.263	90.047	0.588
clpP	Lactococcus lactis subsp. cremoris KW2	55.44	91.469	0.507
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	53.886	91.469	0.493
clpP	Streptococcus mutans UA159	52.88	90.521	0.479
clpP	Streptococcus pyogenes JRS4	52.88	90.521	0.479
clpP	Streptococcus pyogenes MGAS315	52.88	90.521	0.479
clpP	Streptococcus pneumoniae Rx1	52.105	90.047	0.469
clpP	Streptococcus pneumoniae D39	52.105	90.047	0.469
clpP	Streptococcus pneumoniae R6	52.105	90.047	0.469
clpP	Streptococcus pneumoniae TIGR4	52.105	90.047	0.469
clpP	Streptococcus thermophilus LMG 18311	51.579	90.047	0.464
clpP	Streptococcus thermophilus LMD-9	51.579	90.047	0.464