Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABZS46_RS07165 Genome accession   NZ_CP160098
Coordinates   1482674..1483261 (+) Length   195 a.a.
NCBI ID   WP_412521712.1    Uniprot ID   -
Organism   Staphylococcus aureus strain C_01_sau     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477674..1488261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZS46_RS07150 (ABZS46_07150) rapZ 1479153..1480064 (+) 912 WP_000369722.1 RNase adapter RapZ -
  ABZS46_RS07155 (ABZS46_07155) - 1480061..1481056 (+) 996 WP_001248939.1 YvcK family protein -
  ABZS46_RS07160 (ABZS46_07160) whiA 1481167..1482111 (+) 945 WP_000006551.1 DNA-binding protein WhiA -
  ABZS46_RS07165 (ABZS46_07165) clpP 1482674..1483261 (+) 588 WP_412521712.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ABZS46_RS07170 (ABZS46_07170) - 1483443..1485077 (+) 1635 WP_000675920.1 malolactic enzyme -
  ABZS46_RS07175 (ABZS46_07175) - 1485286..1486188 (-) 903 WP_000816301.1 TIGR01777 family oxidoreductase -
  ABZS46_RS07180 (ABZS46_07180) - 1486891..1487520 (+) 630 WP_000070826.1 DUF4887 domain-containing protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21481.51 Da        Isoelectric Point: 4.8965

>NTDB_id=916693 ABZS46_RS07165 WP_412521712.1 1482674..1483261(+) (clpP) [Staphylococcus aureus strain C_01_sau]
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDT
IQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQ
SIEKIQKDTDRDNFLTAEEAKEYGLIDEVVVPETK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=916693 ABZS46_RS07165 WP_412521712.1 1482674..1483261(+) (clpP) [Staphylococcus aureus strain C_01_sau]
ATGAATTTAATTCCTACAGTTATTGAAACAACAAACCGCGGTGAACGTGCATATGATATATACTCACGTTTATTAAAAGA
CCGTATTATTATGTTAGGTTCACAAATTGATGACAACGTAGCAAATTCAATCGTATCACAGTTATTATTCTTACAAGCGC
AAGACTCAGAGAAAGATATTTATTTATACATTAATTCACCAGGTGGAAGTGTAACAGCTGGTTTTGCGATTTATGATACA
ATTCAACACATTAAACCTGATGTTCAAACAATTTGTATCGGTATGGCTGCATCAATGGGATCATTCTTATTAGCAGCTGG
TGCAAAAGGTAAACGTTTCGCGTTACCAAATGCAGAAGTAATGATTCACCAACCATTAGGTGGTGCTCAAGGACAAGCAA
CTGAAATCGAAATTGCTGCAAATCACATTTTAAAAACACGTGAAAAATTAAACCGCATTTTATCAGAGCGTACTGGTCAA
AGTATTGAAAAAATACAAAAAGACACAGATCGTGATAACTTCTTAACTGCAGAAGAAGCTAAAGAATATGGCTTAATTGA
TGAAGTGGTGGTACCTGAAACAAAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

81.053

97.436

0.79
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

96.41

0.656
  clpP Streptococcus pneumoniae Rx1

63.158

97.436

0.615
  clpP Streptococcus pneumoniae D39

63.158

97.436

0.615
  clpP Streptococcus pneumoniae R6

63.158

97.436

0.615
  clpP Streptococcus pneumoniae TIGR4

63.158

97.436

0.615
  clpP Streptococcus thermophilus LMG 18311

62.632

97.436

0.61
  clpP Streptococcus thermophilus LMD-9

62.632

97.436

0.61
  clpP Lactococcus lactis subsp. cremoris KW2

61.579

97.436

0.6
  clpP Streptococcus mutans UA159

60.733

97.949

0.595
  clpP Streptococcus pyogenes JRS4

60.526

97.436

0.59
  clpP Streptococcus pyogenes MGAS315

60.526

97.436

0.59
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

59.474

97.436

0.579