NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	U6I89_RS18010	Genome accession	NZ_CP141263
Coordinates	3531909..3532505 (+)	Length	198 a.a.
NCBI ID	WP_003219849.1	Uniprot ID	A0A9W5LL57
Organism	Bacillus inaquosorum strain BIM B-2002
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3526909..3537505

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6I89_RS17980 (U6I89_17980)	aspP	3527882..3529444 (+)	1563	WP_060399548.1	aspartate/proton symporter AspP	-
U6I89_RS17985 (U6I89_17985)	-	3529539..3530123 (+)	585	WP_060399549.1	TetR family transcriptional regulator	-
U6I89_RS17990 (U6I89_17990)	-	3530205..3530540 (+)	336	WP_060399550.1	DMT family transporter	-
U6I89_RS17995 (U6I89_17995)	-	3530540..3530854 (+)	315	WP_019259545.1	DMT family transporter	-
U6I89_RS18000 (U6I89_18000)	-	3530896..3531408 (-)	513	WP_019259546.1	DUF3231 family protein	-
U6I89_RS18010 (U6I89_18010)	clpP	3531909..3532505 (+)	597	WP_003219849.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
U6I89_RS18015 (U6I89_18015)	pgmB	3532578..3533252 (-)	675	WP_060399551.1	beta-phosphoglucomutase	-
U6I89_RS18020 (U6I89_18020)	-	3533249..3534934 (-)	1686	WP_060399552.1	glycoside hydrolase family 13 protein	-
U6I89_RS18025 (U6I89_18025)	-	3534927..3537200 (-)	2274	WP_060399553.1	glycoside hydrolase family 65 protein	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21873.14 Da Isoelectric Point: 4.7114

                                >NTDB_id=916580 U6I89_RS18010 WP_003219849.1 3531909..3532505(+) (clpP) [Bacillus inaquosorum strain BIM B-2002]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ

PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNTEEQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=916580 U6I89_RS18010 WP_003219849.1 3531909..3532505(+) (clpP) [Bacillus inaquosorum strain BIM B-2002]

ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA

TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCAG

AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATCACAGCCGGTATGGCGATCTATGATACC

ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGCGCATTCCTGCTTGCTGCCGG

CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCACAAGGTCAGGCGA

CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTCCTTGCTGAACGTACTGGCCAG

CCGCTTGAAGTGATCGAACGCGACACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA

CAAAATCCTGACTCGCAATACAGAAGAACAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	96.465	100	0.965
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.063	96.465	0.657
clpP	Streptococcus thermophilus LMG 18311	59.067	97.475	0.576
clpP	Streptococcus thermophilus LMD-9	59.067	97.475	0.576
clpP	Streptococcus pneumoniae Rx1	57.732	97.98	0.566
clpP	Streptococcus pneumoniae D39	57.732	97.98	0.566
clpP	Streptococcus pneumoniae R6	57.732	97.98	0.566
clpP	Streptococcus pneumoniae TIGR4	57.732	97.98	0.566
clpP	Lactococcus lactis subsp. cremoris KW2	57.216	97.98	0.561
clpP	Streptococcus pyogenes JRS4	56.477	97.475	0.551
clpP	Streptococcus pyogenes MGAS315	56.477	97.475	0.551
clpP	Streptococcus mutans UA159	55.155	97.98	0.54
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.155	97.98	0.54

Detailed information NTG0916580