Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   ABHI20_RS00675 Genome accession   NZ_CP160045
Coordinates   104476..104760 (+) Length   94 a.a.
NCBI ID   WP_002987779.1    Uniprot ID   A0A0H2USY2
Organism   Streptococcus pyogenes M1 GAS strain SF370     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99476..109760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHI20_RS00650 (ABHI20_00650) - 101422..101787 (+) 366 WP_002986560.1 DUF1033 family protein -
  ABHI20_RS00655 (ABHI20_00655) comGA 101880..102818 (+) 939 WP_010921798.1 competence type IV pilus ATPase ComGA Machinery gene
  ABHI20_RS00660 (ABHI20_00660) comGB 102754..103788 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABHI20_RS00665 (ABHI20_00665) comGC 103790..104116 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  ABHI20_RS00670 (ABHI20_00670) comGD 104091..104519 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABHI20_RS00675 (ABHI20_00675) comGE 104476..104760 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABHI20_RS00680 (ABHI20_00680) comGF 104753..105187 (+) 435 WP_010921800.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABHI20_RS00685 (ABHI20_00685) comGG 105171..105497 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  ABHI20_RS00690 (ABHI20_00690) comGH 105595..106548 (+) 954 WP_010921802.1 class I SAM-dependent methyltransferase Machinery gene
  ABHI20_RS00695 (ABHI20_00695) - 106607..107803 (+) 1197 WP_010921803.1 acetate kinase -
  ABHI20_RS00700 (ABHI20_00700) - 107990..108298 (+) 309 WP_010921804.1 hypothetical protein -
  ABHI20_RS00705 (ABHI20_00705) proC 108381..109151 (-) 771 WP_010921805.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10672.62 Da        Isoelectric Point: 8.9043

>NTDB_id=916580 ABHI20_RS00675 WP_002987779.1 104476..104760(+) (comGE) [Streptococcus pyogenes M1 GAS strain SF370]
MGIIKKQVKAYIALESMIATGILFSIVILVLSSLQQSQAALTYYRKQQEKLNLALMAVQTRTKEMTLNGCHITILRTDRY
ISIHDDEGEVMKIE

Nucleotide


Download         Length: 285 bp        

>NTDB_id=916580 ABHI20_RS00675 WP_002987779.1 104476..104760(+) (comGE) [Streptococcus pyogenes M1 GAS strain SF370]
GTGGGAATTATCAAAAAACAAGTCAAAGCTTACATAGCCCTTGAAAGTATGATCGCAACAGGCATCCTCTTTAGTATTGT
CATTCTCGTCTTAAGCAGTTTACAGCAGAGTCAGGCTGCTCTAACGTACTATCGAAAGCAGCAAGAAAAGCTTAATCTAG
CCTTGATGGCAGTACAAACTAGAACTAAAGAGATGACATTGAATGGTTGTCATATTACTATTTTACGTACGGATAGATAC
ATTAGTATTCACGATGACGAAGGAGAAGTGATGAAGATTGAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(12-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2USY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Lactococcus lactis subsp. cremoris KW2

38.298

100

0.383