Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   L6430_RS04185 Genome accession   NZ_AP025342
Coordinates   810647..811219 (-) Length   190 a.a.
NCBI ID   WP_065644498.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J41TS8     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 805647..816219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS04165 - 806590..807888 (+) 1299 WP_025810659.1 hemolysin family protein -
  L6430_RS04170 - 808037..809248 (+) 1212 WP_065644499.1 ammonium transporter -
  L6430_RS04175 - 809267..809617 (+) 351 WP_003185936.1 P-II family nitrogen regulator -
  L6430_RS04180 - 809843..810238 (+) 396 WP_081303638.1 hypothetical protein -
  L6430_RS04185 clpP 810647..811219 (-) 573 WP_065644498.1 ATP-dependent Clp protease proteolytic subunit Regulator
  L6430_RS04190 - 811233..811838 (-) 606 WP_065644497.1 RNA polymerase sigma factor -
  L6430_RS04195 - 811974..812849 (-) 876 WP_065644496.1 M23 family metallopeptidase -
  L6430_RS04200 - 813042..813539 (+) 498 WP_065644520.1 GNAT family N-acetyltransferase -
  L6430_RS04205 - 813590..814033 (-) 444 WP_065644495.1 YwnF family protein -
  L6430_RS04210 cls 814281..815729 (+) 1449 WP_065644519.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21079.26 Da        Isoelectric Point: 5.3785

>NTDB_id=91445 L6430_RS04185 WP_065644498.1 810647..811219(-) (clpP) [Bacillus paralicheniformis strain J41TS8]
MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT
MDYVKPDVRTICVGMAASMGAILLAGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIERFFHERTGQ
PIEKLKADMERDYFMDADEAKAYGVIDAVL

Nucleotide


Download         Length: 573 bp        

>NTDB_id=91445 L6430_RS04185 WP_065644498.1 810647..811219(-) (clpP) [Bacillus paralicheniformis strain J41TS8]
ATGAACACCATTCCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA
CCGGATCATTATGATCGGCTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAATTGCTGTTTTTGTCAGCCG
AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCGATTTTGGATACG
ATGGATTATGTGAAGCCGGATGTCCGCACGATCTGTGTCGGAATGGCAGCTTCCATGGGAGCGATTCTCCTAGCCGGCGG
AACAAAAGGCAAACGGTATGCGCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA
CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCGATTCTTTCACGAACGAACGGGTCAG
CCCATTGAAAAACTAAAAGCCGACATGGAACGCGATTACTTTATGGATGCGGACGAAGCGAAGGCATACGGTGTTATTGA
TGCTGTTTTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

65.263

100

0.653
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.032

98.421

0.611
  clpP Streptococcus thermophilus LMG 18311

56.085

99.474

0.558
  clpP Streptococcus thermophilus LMD-9

56.085

99.474

0.558
  clpP Streptococcus pneumoniae R6

55.026

99.474

0.547
  clpP Streptococcus pyogenes JRS4

55.026

99.474

0.547
  clpP Streptococcus pyogenes MGAS315

55.026

99.474

0.547
  clpP Streptococcus pneumoniae TIGR4

55.026

99.474

0.547
  clpP Streptococcus pneumoniae Rx1

55.026

99.474

0.547
  clpP Streptococcus pneumoniae D39

55.026

99.474

0.547
  clpP Streptococcus mutans UA159

54.497

99.474

0.542
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

99.474

0.526
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.852

99.474

0.516

Multiple sequence alignment