Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   L6450_RS15365 Genome accession   NZ_AP025340
Coordinates   3018962..3019534 (-) Length   190 a.a.
NCBI ID   WP_020453223.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J36TS2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3013962..3024534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6450_RS15345 - 3015021..3016319 (+) 1299 WP_041817345.1 hemolysin family protein -
  L6450_RS15350 - 3016468..3017494 (+) 1027 Protein_3042 ammonium transporter -
  L6450_RS15355 - 3017513..3017863 (+) 351 WP_003185936.1 P-II family nitrogen regulator -
  L6450_RS15360 - 3018087..3018470 (+) 384 WP_020453222.1 hypothetical protein -
  L6450_RS15365 clpP 3018962..3019534 (-) 573 WP_020453223.1 ATP-dependent Clp protease proteolytic subunit Regulator
  L6450_RS15370 - 3019548..3020153 (-) 606 WP_020453224.1 RNA polymerase sigma factor -
  L6450_RS15375 - 3020289..3021164 (-) 876 WP_020453225.1 M23 family metallopeptidase -
  L6450_RS15380 - 3021358..3021855 (+) 498 WP_020453226.1 GNAT family N-acetyltransferase -
  L6450_RS15385 - 3021906..3022349 (-) 444 WP_020453227.1 YwnF family protein -
  L6450_RS15390 cls 3022597..3024045 (+) 1449 WP_041817474.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21023.10 Da        Isoelectric Point: 4.9212

>NTDB_id=91414 L6450_RS15365 WP_020453223.1 3018962..3019534(-) (clpP) [Bacillus paralicheniformis strain J36TS2]
MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT
MDYVNPDVRTICVGMAASMGAILLAGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIEHFFNERTGQ
PIEKLKADMERDYFMDADEAKAYGVIDAVL

Nucleotide


Download         Length: 573 bp        

>NTDB_id=91414 L6450_RS15365 WP_020453223.1 3018962..3019534(-) (clpP) [Bacillus paralicheniformis strain J36TS2]
ATGAACACCATACCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA
CCGGATCATTATGATCGGCTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAGTTGCTGTTTTTGTCAGCCG
AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCGATTTTGGATACG
ATGGACTATGTGAACCCGGATGTCCGCACGATCTGCGTCGGAATGGCAGCTTCCATGGGAGCGATTCTCCTCGCCGGCGG
AACAAAAGGCAAACGGTATGCGCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA
CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCACTTTTTTAACGAACGAACGGGCCAG
CCCATTGAAAAACTAAAAGCCGACATGGAACGTGATTATTTTATGGATGCGGACGAAGCGAAGGCATACGGTGTGATTGA
CGCTGTTTTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

64.737

100

0.647
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.497

98.421

0.605
  clpP Streptococcus thermophilus LMG 18311

55.556

99.474

0.553
  clpP Streptococcus thermophilus LMD-9

55.556

99.474

0.553
  clpP Streptococcus pyogenes MGAS315

54.497

99.474

0.542
  clpP Streptococcus pyogenes JRS4

54.497

99.474

0.542
  clpP Streptococcus pneumoniae D39

54.497

99.474

0.542
  clpP Streptococcus pneumoniae R6

54.497

99.474

0.542
  clpP Streptococcus pneumoniae TIGR4

54.497

99.474

0.542
  clpP Streptococcus pneumoniae Rx1

54.497

99.474

0.542
  clpP Streptococcus mutans UA159

53.968

99.474

0.537
  clpP Lactococcus lactis subsp. cremoris KW2

52.381

99.474

0.521
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.323

99.474

0.511

Multiple sequence alignment