NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	SR852_RS06415	Genome accession	NZ_CP140161
Coordinates	1305630..1306226 (-)	Length	198 a.a.
NCBI ID	WP_003185550.1	Uniprot ID	A0A1J6GJE1
Organism	Bacillus licheniformis strain ATCC 14580
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1300630..1311226

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SR852_RS06390 (SR852_06390)	-	1301286..1301876 (+)	591	WP_003185560.1	beta-class carbonic anhydrase	-
SR852_RS06395 (SR852_06395)	-	1301898..1303517 (+)	1620	WP_009329635.1	SulP family inorganic anion transporter	-
SR852_RS06400 (SR852_06400)	-	1303564..1304541 (-)	978	WP_016886529.1	HD domain-containing protein	-
SR852_RS06405 (SR852_06405)	-	1304528..1304863 (-)	336	WP_009329633.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
SR852_RS06410 (SR852_06410)	-	1304975..1305550 (+)	576	WP_003185552.1	TIGR00730 family Rossman fold protein	-
SR852_RS06415 (SR852_06415)	clpP	1305630..1306226 (-)	597	WP_003185550.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
SR852_RS06420 (SR852_06420)	-	1306467..1306784 (+)	318	WP_009329632.1	TM2 domain-containing protein	-
SR852_RS06430 (SR852_06430)	-	1307082..1308629 (-)	1548	WP_003185547.1	glycoside hydrolase family 32 protein	-
SR852_RS06435 (SR852_06435)	-	1308706..1310154 (-)	1449	WP_003185545.1	glycoside hydrolase family 68 protein	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21803.99 Da Isoelectric Point: 4.7982

                                >NTDB_id=913213 SR852_RS06415 WP_003185550.1 1305630..1306226(-) (clpP) [Bacillus licheniformis strain ATCC 14580]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQ

PLEVIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=913213 SR852_RS06415 WP_003185550.1 1305630..1306226(-) (clpP) [Bacillus licheniformis strain ATCC 14580]

ATGAATTTAATACCTACAGTCATTGAACAGACGAACCGCGGGGAAAGAGCGTATGACATTTACTCACGCTTGTTGAAAGA

CCGTATCATTATGCTGGGATCAGCAATCGATGACAATGTTGCGAACTCCATCGTATCTCAGCTTCTATTCCTTGAAGCCG

AAGATCCAGAAAAAGATATCAGCATCTATATCAACAGCCCTGGCGGCTCCATCACAGCCGGTATGGCGATTTATGACACC

ATGCAGTTTATTAAACCGCAAGTCTCCACGATTTGTACGGGAATGGCGGCATCCATGGGTGCGTTCCTTCTTGCAGCCGG

CGAGAAAGGGAAGCGCTACGCTCTTCCAAACAGTGAAGTCATGATCCACCAGCCGCTTGGCGGAGCGCAGGGTCAGGCGA

CTGAAATTGAAATTGCCGCGAAACGCATTCTTTCATTGCGCGACAAGCTGAACAAAATCCTTGCAGAGCGCACTGGGCAG

CCGCTTGAAGTAATCGAGCGCGATACAGACCGCGACAACTTCAAAACGGCTGAAGAAGCAAAAGAATACGGCCTGATTGA

TAAAGTGCTTACACGCAATATCGACGCACAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A1J6GJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	92.386	99.495	0.919
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.229	96.97	0.662
clpP	Streptococcus thermophilus LMG 18311	58.031	97.475	0.566
clpP	Streptococcus thermophilus LMD-9	58.031	97.475	0.566
clpP	Lactococcus lactis subsp. cremoris KW2	56.995	97.475	0.556
clpP	Streptococcus pneumoniae Rx1	56.995	97.475	0.556
clpP	Streptococcus pneumoniae D39	56.995	97.475	0.556
clpP	Streptococcus pneumoniae R6	56.995	97.475	0.556
clpP	Streptococcus pneumoniae TIGR4	56.995	97.475	0.556
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.922	97.475	0.535

Detailed information NTG0913213