Detailed information NTG0913207

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: SR852_RS05540
• Genome accession: NZ_CP140161
• Coordinates: 1133329..1133901 (+)
• Length: 190 a.a.
• NCBI ID: WP_003185937.1
• Uniprot ID: A0A415J8E4
• Organism: Bacillus licheniformis strain ATCC 14580
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1128329..1138901

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SR852_RS05515 (SR852_05515)	cls	1128819..1130267 (-)	1449	WP_025806104.1	cardiolipin synthase	-
SR852_RS05520 (SR852_05520)	-	1130517..1130960 (+)	444	WP_009329719.1	YwnF family protein	-
SR852_RS05525 (SR852_05525)	-	1131008..1131505 (-)	498	WP_011198381.1	GNAT family N-acetyltransferase	-
SR852_RS05530 (SR852_05530)	-	1131698..1132573 (+)	876	WP_003185941.1	M23 family metallopeptidase	-
SR852_RS05535 (SR852_05535)	-	1132710..1133315 (+)	606	WP_011198380.1	RNA polymerase sigma factor	-
SR852_RS05540 (SR852_05540)	clpP	1133329..1133901 (+)	573	WP_003185937.1	ATP-dependent Clp protease proteolytic subunit	Regulator
SR852_RS05545 (SR852_05545)	-	1133950..1134300 (-)	351	WP_003185936.1	P-II family nitrogen regulator	-
SR852_RS05550 (SR852_05550)	-	1134319..1135530 (-)	1212	WP_003185933.1	ammonium transporter	-
SR852_RS05555 (SR852_05555)	-	1135691..1136989 (-)	1299	WP_003185931.1	hemolysin family protein	-
SR852_RS05560 (SR852_05560)	-	1137150..1138106 (+)	957	WP_003185929.1	magnesium transporter CorA family protein	-
SR852_RS05565 (SR852_05565)	-	1138169..1138576 (+)	408	WP_003185927.1	CBS domain-containing protein	-

Sequence

Protein

• Length: 190 a.a.
• Molecular weight: 21049.23 Da
• Isoelectric Point: 5.3785

>NTDB_id=913207 SR852_RS05540 WP_003185937.1 1133329..1133901(+) (clpP) [Bacillus licheniformis strain ATCC 14580]
MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFNDDLANRVTAQLLFLSAEDNEKDISIYINSPGGSTSAGYAILDT
MDYVKPDVRTICVGMAASMGAILLAGGAKGKRYALKNSEIMIHQPLGGVKGQATDMEISAKRIIKLREKIERFFHERTGQ
PIEKLKADMERDYFMDADEAKAYGVIDAVL

Nucleotide

• Length: 573 bp

>NTDB_id=913207 SR852_RS05540 WP_003185937.1 1133329..1133901(+) (clpP) [Bacillus licheniformis strain ATCC 14580]
ATGAACACCATTCCTTACGTCATTGAGAAAACGGCTGCCGGTGAAAGATCGTACGATATTTTTTCCAGACTTTTAAAAGA
CCGGATCATTATGATCGGTTCTGAATTCAACGATGACCTCGCCAATCGGGTCACCGCCCAATTGCTGTTTTTGTCAGCTG
AAGACAATGAAAAAGACATTTCGATCTATATCAACAGCCCGGGCGGATCAACTTCCGCGGGATATGCAATTTTGGATACG
ATGGATTATGTGAAGCCTGATGTCCGCACGATATGCGTCGGAATGGCCGCTTCCATGGGAGCGATTCTCCTCGCCGGCGG
AGCAAAAGGCAAACGGTATGCACTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA
CAGACATGGAGATTTCAGCGAAGCGGATCATCAAACTGAGGGAAAAAATCGAGCGCTTCTTTCACGAACGAACGGGCCAG
CCCATTGAAAAACTAAAAGCCGACATGGAACGCGATTACTTTATGGATGCGGACGAAGCGAAGGCATACGGTGTTATTGA
TGCTGTTTTGTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (14-190)

3D structure

• AlphaFold DB: A0A415J8E4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	65.263	100	0.653
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.567	98.421	0.616
clpP	Streptococcus thermophilus LMD-9	55.556	99.474	0.553
clpP	Streptococcus pneumoniae Rx1	55.556	99.474	0.553
clpP	Streptococcus pneumoniae D39	55.556	99.474	0.553
clpP	Streptococcus thermophilus LMG 18311	55.556	99.474	0.553
clpP	Streptococcus pneumoniae R6	55.556	99.474	0.553
clpP	Streptococcus pneumoniae TIGR4	55.556	99.474	0.553
clpP	Streptococcus mutans UA159	55.026	99.474	0.547
clpP	Streptococcus pyogenes JRS4	54.497	99.474	0.542
clpP	Streptococcus pyogenes MGAS315	54.497	99.474	0.542
clpP	Lactococcus lactis subsp. cremoris KW2	51.852	99.474	0.516
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.323	99.474	0.511