Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SR921_RS11465 Genome accession   NZ_CP140150
Coordinates   2305788..2307041 (-) Length   417 a.a.
NCBI ID   WP_094427662.1    Uniprot ID   -
Organism   Shouchella clausii strain ATCC 700160     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2300788..2312041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR921_RS11450 (SR921_11450) - 2301708..2302700 (-) 993 WP_094427666.1 metallophosphoesterase -
  SR921_RS11455 (SR921_11455) recA 2302897..2303949 (-) 1053 WP_094427664.1 recombinase RecA Machinery gene
  SR921_RS11460 (SR921_11460) - 2304178..2305791 (-) 1614 WP_062750624.1 DEAD/DEAH box helicase -
  SR921_RS11465 (SR921_11465) cinA 2305788..2307041 (-) 1254 WP_094427662.1 competence/damage-inducible protein A Machinery gene
  SR921_RS11470 (SR921_11470) pgsA 2307055..2307633 (-) 579 WP_011247045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SR921_RS11475 (SR921_11475) - 2307789..2308697 (-) 909 WP_094427660.1 RodZ domain-containing protein -
  SR921_RS11480 (SR921_11480) - 2308719..2309486 (-) 768 WP_011247047.1 DUF3388 domain-containing protein -
  SR921_RS11485 (SR921_11485) - 2309680..2309928 (-) 249 WP_094427658.1 DUF3243 domain-containing protein -
  SR921_RS11490 (SR921_11490) ymfI 2310001..2310714 (-) 714 WP_094427656.1 elongation factor P 5-aminopentanone reductase -
  SR921_RS11495 (SR921_11495) yfmH 2310711..2312003 (-) 1293 WP_094427654.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 44959.53 Da        Isoelectric Point: 6.3509

>NTDB_id=913024 SR921_RS11465 WP_094427662.1 2305788..2307041(-) (cinA) [Shouchella clausii strain ATCC 700160]
MNAEIMAVGSELLLGQIANTNGQFISKQLASIGVDVYRHTVVGDNEDRLKKALQEAHERADLVILTGGLGPTKDDLTKET
VAAFCGKKLVYDEAALHEIEHYFKRHNRVMTPNNKKQAYVIEGCTVLANRHGMAPGMLCELEDGKKLALLPGPPSEMKPM
FVNELLPKLLGATEHTEITSRVLHFFGIGESQLETDLLDLIATQTNPTIAPLAGDGEVKLRLTVKHADKNEAARLLDETE
ALIRKRVGSYLYGYNETTLVKETFLRLQASGLTIASAESLTAGLFSSELAAFAGASDVLKGSVTAYSNELKQQLLQVSSA
TLASDGAISEACALEMARGVKTLYGSDMAISFTGVAGPGVQEGHEAGTVFLALLLPGGKERVYTLSLSGGRNAVRMRAVK
FGYFYLLEELKRSNGSK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=913024 SR921_RS11465 WP_094427662.1 2305788..2307041(-) (cinA) [Shouchella clausii strain ATCC 700160]
TTGAATGCAGAAATAATGGCCGTTGGCTCAGAGCTGCTTCTTGGCCAGATCGCCAATACAAATGGCCAATTCATCTCTAA
ACAGCTAGCAAGCATTGGTGTCGACGTGTACCGGCACACAGTTGTGGGAGATAACGAGGACAGGCTAAAAAAAGCACTTC
AAGAAGCACATGAGCGTGCCGATCTCGTCATCTTAACGGGCGGGCTTGGCCCGACAAAAGATGACTTGACGAAAGAAACG
GTCGCGGCGTTTTGTGGAAAAAAGCTTGTGTACGATGAAGCCGCTCTTCATGAAATTGAACATTATTTTAAACGCCATAA
CCGCGTCATGACACCTAACAACAAAAAGCAAGCCTATGTGATTGAAGGCTGCACCGTGCTTGCAAACCGTCATGGCATGG
CCCCCGGAATGCTATGCGAGCTTGAAGACGGGAAAAAACTGGCGCTTTTGCCTGGACCACCGAGCGAAATGAAGCCAATG
TTCGTCAACGAGCTTTTGCCTAAACTGTTAGGCGCAACTGAACATACAGAAATCACTTCCCGTGTGCTTCATTTTTTTGG
AATTGGGGAATCACAATTAGAAACAGACCTTTTGGACTTGATTGCGACGCAAACGAACCCGACAATCGCTCCATTGGCTG
GTGATGGGGAAGTGAAACTGCGCTTGACTGTAAAGCATGCAGATAAAAATGAAGCTGCCCGTTTGCTTGATGAAACGGAA
GCATTGATTCGGAAACGGGTCGGTTCATATTTGTACGGCTACAACGAAACGACACTGGTCAAGGAAACGTTTTTGCGTTT
GCAGGCGAGCGGTCTGACAATTGCCAGCGCCGAAAGCTTGACTGCCGGGCTTTTCTCAAGCGAATTGGCTGCGTTTGCTG
GTGCATCGGACGTGCTAAAAGGGAGCGTGACTGCCTACTCCAATGAACTGAAGCAGCAATTGCTTCAAGTTTCAAGCGCC
ACCCTTGCTAGCGACGGCGCCATCAGCGAAGCATGTGCGTTGGAAATGGCACGTGGCGTCAAAACACTTTACGGTTCCGA
TATGGCCATCTCTTTTACAGGAGTGGCTGGGCCCGGGGTGCAAGAGGGCCACGAAGCGGGTACCGTTTTTCTGGCGCTTC
TTTTGCCAGGAGGGAAAGAGCGCGTATACACGCTGTCTTTATCGGGGGGACGCAATGCCGTACGAATGCGGGCGGTGAAA
TTTGGCTATTTTTATTTACTGGAAGAATTGAAAAGGAGCAATGGTAGTAAATGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.908

98.561

0.571
  cinA Streptococcus mitis NCTC 12261

48.775

97.842

0.477
  cinA Streptococcus mitis SK321

48.529

97.842

0.475
  cinA Streptococcus pneumoniae TIGR4

48.039

97.842

0.47
  cinA Streptococcus mutans UA159

48.139

96.643

0.465
  cinA Streptococcus pneumoniae Rx1

47.549

97.842

0.465
  cinA Streptococcus pneumoniae R6

47.549

97.842

0.465
  cinA Streptococcus pneumoniae D39

47.304

97.842

0.463