Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U0320_RS08510 Genome accession   NZ_CP139868
Coordinates   1653267..1653662 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GP11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1648267..1658662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0320_RS08485 (U0320_08475) thiE 1648672..1649313 (-) 642 WP_000483164.1 thiamine phosphate synthase -
  U0320_RS08490 (U0320_08480) thiM 1649315..1650106 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  U0320_RS08495 (U0320_08485) thiD 1650090..1650920 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  U0320_RS08500 (U0320_08490) tenA 1650913..1651602 (-) 690 WP_000396072.1 thiaminase II -
  U0320_RS08505 (U0320_08495) sceD 1652183..1652878 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  U0320_RS08510 (U0320_08500) ssb 1653267..1653662 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  U0320_RS08515 (U0320_08505) - 1653856..1654296 (+) 441 WP_000846746.1 YwpF-like family protein -
  U0320_RS08520 (U0320_08510) fabZ 1654356..1654796 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  U0320_RS08525 (U0320_08515) murA 1654830..1656095 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  U0320_RS08530 (U0320_08520) - 1656206..1656439 (-) 234 WP_000384523.1 DUF1146 family protein -
  U0320_RS08535 (U0320_08525) - 1656571..1656663 (-) 93 WP_045177772.1 hypothetical protein -
  U0320_RS08540 (U0320_08530) - 1657032..1657436 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=911640 U0320_RS08510 WP_000932694.1 1653267..1653662(-) (ssb) [Staphylococcus aureus strain GP11]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=911640 U0320_RS08510 WP_000932694.1 1653267..1653662(-) (ssb) [Staphylococcus aureus strain GP11]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992