Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   U0447_RS04455 Genome accession   NZ_CP139861
Coordinates   833120..833524 (-) Length   134 a.a.
NCBI ID   WP_000588023.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 828120..838524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS04415 rnpA 828534..828905 (-) 372 WP_000739246.1 ribonuclease P protein component -
  U0447_RS04420 - 828922..829053 (-) 132 WP_000768904.1 hypothetical protein -
  U0447_RS04425 - 829054..830244 (-) 1191 WP_000167753.1 acetate kinase -
  U0447_RS04430 comYH 830295..831248 (-) 954 WP_000345126.1 class I SAM-dependent methyltransferase Machinery gene
  U0447_RS04435 - 831309..831903 (-) 595 Protein_840 class I SAM-dependent methyltransferase -
  U0447_RS04440 comGG/cglG 832040..832453 (-) 414 WP_000265620.1 competence type IV pilus minor pilin ComGG Machinery gene
  U0447_RS04445 comGF/cglF 832431..832892 (-) 462 WP_000250540.1 competence type IV pilus minor pilin ComGF Machinery gene
  U0447_RS04450 comGE/cglE 832855..833157 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  U0447_RS04455 comGD/cglD 833120..833524 (-) 405 WP_000588023.1 competence type IV pilus minor pilin ComGD Machinery gene
  U0447_RS04460 comGC/cglC 833517..833843 (-) 327 WP_000738630.1 comG operon protein ComGC Machinery gene
  U0447_RS04465 comGB/cglB 833845..834861 (-) 1017 WP_075218762.1 competence type IV pilus assembly protein ComGB Machinery gene
  U0447_RS04470 comGA/cglA/cilD 834809..835750 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  U0447_RS04475 - 835826..836191 (-) 366 WP_000286415.1 DUF1033 family protein -
  U0447_RS04480 - 836342..837400 (-) 1059 WP_000649466.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14638.82 Da        Isoelectric Point: 10.2164

>NTDB_id=911413 U0447_RS04455 WP_000588023.1 833120..833524(-) (comGD/cglD) [Streptococcus pneumoniae strain 16H2017-2]
MIKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide


Download         Length: 405 bp        

>NTDB_id=911413 U0447_RS04455 WP_000588023.1 833120..833524(-) (comGD/cglD) [Streptococcus pneumoniae strain 16H2017-2]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCGGTAGAGGAACAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae TIGR4

98.507

100

0.985
  comGD/cglD Streptococcus pneumoniae Rx1

97.761

100

0.978
  comGD/cglD Streptococcus pneumoniae D39

97.761

100

0.978
  comGD/cglD Streptococcus pneumoniae R6

97.761

100

0.978
  comGD/cglD Streptococcus mitis SK321

97.015

100

0.97
  comGD/cglD Streptococcus mitis NCTC 12261

97.744

99.254

0.97
  comYD Streptococcus gordonii str. Challis substr. CH1

58.268

94.776

0.552
  comYD Streptococcus mutans UA140

49.219

95.522

0.47
  comYD Streptococcus mutans UA159

49.219

95.522

0.47