Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SD440_RS17265 Genome accession   NZ_CP139561
Coordinates   3296316..3296912 (+) Length   198 a.a.
NCBI ID   WP_007500118.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NCCP     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3255548..3295864 3296316..3296912 flank 452


Gene organization within MGE regions


Location: 3255548..3296912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS17060 - 3255548..3256363 (-) 816 WP_336750402.1 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein -
  SD440_RS17065 nikD 3256377..3257192 (-) 816 WP_254000807.1 nickel import ATP-binding protein NikD -
  SD440_RS17070 nikC 3257197..3258030 (-) 834 WP_017359202.1 nickel ABC transporter permease subunit NikC -
  SD440_RS17075 nikB 3258027..3258971 (-) 945 WP_035389444.1 nickel ABC transporter permease subunit NikB -
  SD440_RS17080 nikA 3258990..3260609 (-) 1620 WP_048002931.1 nickel ABC transporter substrate-binding protein -
  SD440_RS17085 - 3260778..3261941 (-) 1164 WP_265154493.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  SD440_RS17090 - 3261938..3262627 (-) 690 WP_052321040.1 acetyltransferase -
  SD440_RS17095 - 3262590..3263183 (-) 594 WP_017359198.1 sugar transferase -
  SD440_RS17100 - 3263204..3264733 (-) 1530 WP_345911118.1 MATE family efflux transporter -
  SD440_RS17105 - 3264762..3265790 (-) 1029 WP_345911119.1 polysaccharide pyruvyl transferase family protein -
  SD440_RS17110 - 3265790..3266818 (-) 1029 WP_113746964.1 glycosyltransferase -
  SD440_RS17115 - 3266846..3267949 (-) 1104 WP_025208005.1 EpsG family protein -
  SD440_RS17120 - 3267964..3269094 (-) 1131 WP_345911120.1 glycosyltransferase family 1 protein -
  SD440_RS17125 - 3269087..3269926 (-) 840 WP_017368088.1 glycosyltransferase -
  SD440_RS17130 - 3269929..3271068 (-) 1140 WP_345911121.1 glycosyltransferase family 4 protein -
  SD440_RS17135 - 3271034..3272908 (-) 1875 WP_017368090.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  SD440_RS17140 - 3273074..3273757 (-) 684 WP_008347761.1 CpsD/CapB family tyrosine-protein kinase -
  SD440_RS17145 - 3273747..3274478 (-) 732 WP_007500132.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  SD440_RS17150 - 3274736..3275206 (+) 471 WP_017359189.1 helix-turn-helix domain-containing protein -
  SD440_RS17155 - 3275487..3275711 (-) 225 WP_008347764.1 phage holin -
  SD440_RS17160 - 3275856..3276752 (-) 897 WP_007500130.1 iron-hydroxamate ABC transporter substrate-binding protein -
  SD440_RS17165 - 3276769..3277770 (-) 1002 WP_322536041.1 iron ABC transporter permease -
  SD440_RS17170 - 3277767..3278795 (-) 1029 WP_322536042.1 iron ABC transporter permease -
  SD440_RS17175 - 3279130..3280539 (+) 1410 WP_017359186.1 polysaccharide deacetylase family protein -
  SD440_RS17180 abc-f 3280556..3282115 (-) 1560 WP_345911122.1 ribosomal protection-like ABC-F family protein -
  SD440_RS17185 - 3282512..3283678 (-) 1167 WP_345911123.1 macrolide family glycosyltransferase -
  SD440_RS17190 - 3283865..3284416 (-) 552 WP_017359180.1 hypothetical protein -
  SD440_RS17195 - 3285065..3285511 (-) 447 WP_345911124.1 hypothetical protein -
  SD440_RS17200 - 3285501..3285944 (-) 444 WP_345911125.1 hypothetical protein -
  SD440_RS17205 - 3286091..3288637 (-) 2547 WP_345911126.1 thioester domain-containing protein -
  SD440_RS17210 - 3288703..3289413 (-) 711 WP_345911127.1 hypothetical protein -
  SD440_RS17215 - 3289759..3290811 (-) 1053 WP_345911128.1 replication initiation factor domain-containing protein -
  SD440_RS17220 - 3290882..3291289 (-) 408 WP_345911129.1 hypothetical protein -
  SD440_RS17225 - 3291623..3291865 (-) 243 WP_345911130.1 hypothetical protein -
  SD440_RS17230 - 3291871..3292194 (-) 324 WP_186303737.1 DUF771 domain-containing protein -
  SD440_RS17235 - 3292231..3292437 (-) 207 WP_087977342.1 helix-turn-helix transcriptional regulator -
  SD440_RS17240 - 3292601..3292993 (+) 393 WP_075611962.1 helix-turn-helix transcriptional regulator -
  SD440_RS17245 - 3293274..3293402 (-) 129 WP_260856985.1 hypothetical protein -
  SD440_RS17250 - 3293418..3294506 (-) 1089 WP_345911131.1 AimR family lysis-lysogeny pheromone receptor -
  SD440_RS17255 - 3294728..3295864 (+) 1137 WP_345911132.1 tyrosine-type recombinase/integrase -
  SD440_RS17265 clpP 3296316..3296912 (+) 597 WP_007500118.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21846.03 Da        Isoelectric Point: 4.6905

>NTDB_id=910171 SD440_RS17265 WP_007500118.1 3296316..3296912(+) (clpP) [Bacillus altitudinis strain NCCP]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ
PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEEQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=910171 SD440_RS17265 WP_007500118.1 3296316..3296912(+) (clpP) [Bacillus altitudinis strain NCCP]
ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA
CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTATCACAGCTTCTCTTCTTAGAAGCCG
AGGATCCAGAAAAAGATATCTCTATCTACATTAACAGCCCTGGCGGTTCGATCACAGCTGGTATGGCCATTTACGATACG
ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG
TGAAAAAGGTAAGCGTTATGCCCTTCCAAATAGTGAAGTGATGATTCACCAACCACTAGGTGGTGCGCAAGGTCAAGCAA
CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTTGCTGAACGTACTGGTCAG
CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTTAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA
CAAAGTCTTGACCCGTAATACAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

93.434

100

0.934
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.539

96.465

0.652
  clpP Streptococcus thermophilus LMG 18311

58.549

97.475

0.571
  clpP Streptococcus thermophilus LMD-9

58.549

97.475

0.571
  clpP Lactococcus lactis subsp. cremoris KW2

56.186

97.98

0.551
  clpP Streptococcus pneumoniae Rx1

55.67

97.98

0.545
  clpP Streptococcus pneumoniae D39

55.67

97.98

0.545
  clpP Streptococcus pneumoniae R6

55.67

97.98

0.545
  clpP Streptococcus pneumoniae TIGR4

55.67

97.98

0.545
  clpP Streptococcus pyogenes JRS4

55.44

97.475

0.54
  clpP Streptococcus pyogenes MGAS315

55.44

97.475

0.54
  clpP Streptococcus mutans UA159

54.639

97.98

0.535
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.124

97.98

0.53