Detailed information NTG0909996

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: SNE23_RS13685
• Genome accession: NZ_CP139483
• Coordinates: 2635689..2636270 (-)
• Length: 193 a.a.
• NCBI ID: WP_048525873.1
• Uniprot ID: A0A1J9UU65
• Organism: Bacillus sp. RA(2023)
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2630689..2641270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SNE23_RS13660 (SNE23_13660)	-	2631059..2631895 (-)	837	WP_053082837.1	PP2C family serine/threonine-protein phosphatase	-
SNE23_RS13665 (SNE23_13665)	-	2632009..2632176 (-)	168	WP_157409861.1	septum formation initiator	-
SNE23_RS13670 (SNE23_13670)	-	2632580..2633416 (-)	837	WP_001059838.1	ABC transporter permease	-
SNE23_RS13675 (SNE23_13675)	-	2633409..2634614 (-)	1206	WP_048525871.1	quaternary amine ABC transporter ATP-binding protein	-
SNE23_RS13680 (SNE23_13680)	-	2634786..2635643 (+)	858	WP_071757630.1	glycine betaine ABC transporter substrate-binding protein	-
SNE23_RS13685 (SNE23_13685)	clpP	2635689..2636270 (-)	582	WP_048525873.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
SNE23_RS13690 (SNE23_13690)	-	2636292..2636978 (-)	687	WP_157409862.1	RNA polymerase subunit sigma-70	-
SNE23_RS13695 (SNE23_13695)	-	2637122..2637442 (+)	321	WP_048525875.1	2Fe-2S iron-sulfur cluster-binding protein	-
SNE23_RS13700 (SNE23_13700)	rpiA	2637444..2638109 (+)	666	WP_157409863.1	ribose 5-phosphate isomerase A	-
SNE23_RS13705 (SNE23_13705)	-	2638216..2638650 (+)	435	WP_048525877.1	GNAT family N-acetyltransferase	-
SNE23_RS13710 (SNE23_13710)	-	2638768..2640135 (-)	1368	WP_048525878.1	lytic polysaccharide monooxygenase	-
SNE23_RS13715 (SNE23_13715)	-	2640476..2640934 (-)	459	Protein_2630	formylglycine-generating enzyme family protein	-

Sequence

Protein

• Length: 193 a.a.
• Molecular weight: 21179.41 Da
• Isoelectric Point: 4.9105

>NTDB_id=909996 SNE23_RS13685 WP_048525873.1 2635689..2636270(-) (clpP) [Bacillus sp. RA(2023)]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIFLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAKGQATEIEITAKRILKLKHDINEMIAEKTGQ
PIDRVAHDTERDYFMTAEEAKAYGIVDDVVTKK

Nucleotide

• Length: 582 bp

>NTDB_id=909996 SNE23_RS13685 WP_048525873.1 2635689..2636270(-) (clpP) [Bacillus sp. RA(2023)]
ATGAATGCAATTCCATATGTTGTAGAACAAACGAAATTAGGAGAACGTTCCTATGATATATATTCAAGGTTATTAAAAGA
CCGCATTATTATTATCGGTTCAGAAATAAATGATCAAGTAGCGAGCAGTGTCGTAGCGCAATTATTATTTTTAGAAGCGG
AAGATGCAGAGAAAGATATATTTTTATACATTAATAGCCCAGGCGGATCAACGACAGCAGGTTTTGCCATATTAGATACG
ATGAATTTAATCAAACCAGATGTACAAACGCTATGCATGGGATTTGCAGCATCATTTGGTGCATTGTTATTATTATCAGG
TGCAAAAGGAAAACGGTTTGCGCTACCTAACAGTGAAATTATGATTCATCAACCGCTTGGTGGTGCAAAGGGGCAGGCTA
CGGAAATTGAAATAACAGCAAAAAGGATATTGAAGTTAAAGCATGATATTAATGAAATGATTGCAGAAAAAACGGGGCAA
CCAATTGACAGAGTAGCACATGATACAGAAAGAGATTATTTTATGACTGCAGAAGAAGCAAAAGCATATGGGATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (14-192)

3D structure

• AlphaFold DB: A0A1J9UU65

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.016	98.964	0.663
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.196	97.927	0.658
clpP	Streptococcus thermophilus LMG 18311	54.688	99.482	0.544
clpP	Streptococcus thermophilus LMD-9	54.688	99.482	0.544
clpP	Streptococcus pyogenes JRS4	55.556	97.927	0.544
clpP	Streptococcus pyogenes MGAS315	55.556	97.927	0.544
clpP	Streptococcus pneumoniae Rx1	54.167	99.482	0.539
clpP	Streptococcus pneumoniae D39	54.167	99.482	0.539
clpP	Streptococcus pneumoniae R6	54.167	99.482	0.539
clpP	Streptococcus pneumoniae TIGR4	54.167	99.482	0.539
clpP	Streptococcus mutans UA159	53.439	97.927	0.523
clpP	Lactococcus lactis subsp. cremoris KW2	51.323	97.927	0.503
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	49.735	97.927	0.487