Detailed information NTG0909964

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SOJ49_RS14330
• Genome accession: NZ_CP139482
• Coordinates: 3213509..3214873 (+)
• Length: 454 a.a.
• NCBI ID: WP_369855175.1
• Uniprot ID: -
• Organism: Candidatus Thalassolituus haligoni strain BB40
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3208509..3219873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOJ49_RS14315	-	3209271..3210092 (+)	822	WP_369855172.1	outer membrane protein assembly factor BamD	-
SOJ49_RS14320	-	3210225..3211859 (-)	1635	WP_369855173.1	NAD+ synthase	-
SOJ49_RS14325	-	3211974..3213512 (+)	1539	WP_369855174.1	PAS domain-containing sensor histidine kinase	-
SOJ49_RS14330	pilR	3213509..3214873 (+)	1365	WP_369855175.1	sigma-54-dependent transcriptional regulator	Regulator
SOJ49_RS14335	-	3215029..3215583 (+)	555	WP_369855176.1	GspH/FimT family pseudopilin	-
SOJ49_RS14340	-	3215949..3216398 (+)	450	WP_369855177.1	hypothetical protein	-
SOJ49_RS14345	-	3216419..3216772 (+)	354	WP_369855178.1	hypothetical protein	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 50569.18 Da
• Isoelectric Point: 5.3840

>NTDB_id=909964 SOJ49_RS14330 WP_369855175.1 3213509..3214873(+) (pilR) [Candidatus Thalassolituus haligoni strain BB40]
MKKYSALIIDDEPDIRQLIALTLSRMDMECYQAANVSEALALLAERPYHFCVTDMKLPDGNGLEIIQLCHARYADMPVAM
ITAYGSMDMAVEALKAGAFDVVAKPLDIARLRELVAAALQLTRVPVHLESLPSSDALLGRSGAMMALKDKIQKVARTQAP
VFIHGESGTGKELVARLIHHQSSRADNPFIPVNCGAIPKDLMESEFFGHKRGSFTGASADKDGFFKAAEGGTLFLDEVAE
LPLDMQAKLLRVIQEKATRAVGSEHESPIDVRILSASHKDLAKMVEEERFRQDLFFRLDVIQIAVPRLRERQEDIPTLIN
HFIRKYSREWGMPEASVGRDAMAALMDYNYPGNVRELENILQRAVTMAEGDEINQLDLNLPVHDKDPATRLLMPAIDPAA
AIETSNLEDYLENIERSAITQALEATRWNKTAAAEKLGISFRALRYRCKKLDID

Nucleotide

• Length: 1365 bp

>NTDB_id=909964 SOJ49_RS14330 WP_369855175.1 3213509..3214873(+) (pilR) [Candidatus Thalassolituus haligoni strain BB40]
ATGAAAAAATACTCCGCCCTGATCATCGACGACGAGCCGGATATACGCCAGCTGATCGCCCTGACCCTGAGTCGCATGGA
CATGGAGTGTTACCAGGCCGCCAACGTCAGTGAGGCATTAGCCTTGCTCGCCGAGCGGCCTTACCACTTTTGCGTCACCG
ATATGAAACTGCCGGATGGCAACGGTCTGGAGATTATCCAGCTGTGCCATGCTCGCTATGCTGATATGCCAGTCGCCATG
ATCACCGCCTATGGCAGCATGGATATGGCGGTTGAGGCGTTAAAAGCCGGTGCTTTTGACGTGGTTGCCAAACCGCTGGA
TATTGCCCGTTTGCGTGAGCTGGTTGCAGCGGCATTACAACTGACCCGAGTACCGGTACATCTGGAATCCCTGCCTTCCA
GCGATGCCCTGCTCGGACGTTCTGGCGCCATGATGGCGCTCAAGGACAAGATCCAGAAAGTCGCCCGAACCCAGGCACCG
GTATTTATCCACGGCGAATCCGGCACCGGCAAGGAACTGGTCGCACGACTGATCCACCATCAGAGCTCTCGCGCCGATAA
TCCCTTTATTCCGGTCAACTGTGGCGCCATTCCAAAAGACCTGATGGAAAGCGAATTCTTTGGCCATAAACGTGGCTCCT
TTACTGGTGCCAGTGCTGACAAGGATGGTTTTTTCAAAGCGGCAGAAGGCGGCACCCTGTTCCTTGATGAAGTCGCTGAA
TTACCCCTCGACATGCAGGCCAAACTGCTACGAGTGATTCAAGAAAAAGCCACCCGAGCCGTCGGCAGCGAGCATGAATC
TCCGATCGACGTCCGCATTCTCAGCGCCAGCCACAAGGATCTGGCTAAAATGGTAGAAGAAGAACGCTTCCGCCAGGATT
TGTTTTTTCGCCTTGATGTGATCCAGATTGCCGTACCCCGGCTACGTGAACGGCAGGAAGATATTCCCACCTTGATTAAT
CACTTTATCCGTAAATACAGCCGCGAATGGGGCATGCCGGAAGCCAGCGTCGGTCGTGATGCCATGGCAGCCCTGATGGA
CTACAACTACCCCGGCAACGTCCGGGAACTGGAAAACATCCTCCAACGAGCCGTCACCATGGCGGAAGGCGATGAGATTA
ACCAGCTCGATCTGAATCTGCCCGTGCATGATAAAGACCCCGCCACCCGATTACTGATGCCCGCCATCGACCCGGCCGCC
GCCATCGAAACCAGCAATCTGGAAGACTATCTGGAAAACATTGAACGCAGTGCCATCACCCAGGCATTGGAGGCTACCCG
CTGGAACAAGACCGCCGCCGCCGAAAAGCTTGGAATCAGCTTCCGGGCACTGCGTTATCGTTGCAAAAAGCTGGATATCG
ATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (411-451)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	57.768	100	0.581
pilR	Acinetobacter baumannii strain A118	46.405	100	0.469