Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SM123_RS08715 Genome accession   NZ_CP139419
Coordinates   1800413..1802398 (-) Length   661 a.a.
NCBI ID   WP_070465015.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795413..1807398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS08695 (SM123_08695) amiF 1795898..1796824 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  SM123_RS08700 (SM123_08700) amiE 1796835..1797902 (-) 1068 WP_070665174.1 ABC transporter ATP-binding protein Regulator
  SM123_RS08705 (SM123_08705) amiD 1797914..1798840 (-) 927 WP_049488657.1 oligopeptide ABC transporter permease OppC Regulator
  SM123_RS08710 (SM123_08710) amiC 1798840..1800339 (-) 1500 WP_021154493.1 ABC transporter permease Regulator
  SM123_RS08715 (SM123_08715) amiA3 1800413..1802398 (-) 1986 WP_070465015.1 peptide ABC transporter substrate-binding protein Regulator
  SM123_RS08720 (SM123_08720) - 1802604..1803845 (+) 1242 WP_049475085.1 serine hydrolase -
  SM123_RS08725 (SM123_08725) sufB 1803904..1805316 (-) 1413 WP_003010279.1 Fe-S cluster assembly protein SufB -
  SM123_RS08730 (SM123_08730) sufU 1805349..1805783 (-) 435 WP_320909442.1 Fe-S cluster assembly sulfur transfer protein SufU -
  SM123_RS08735 (SM123_08735) - 1805770..1806996 (-) 1227 WP_023919307.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 72608.96 Da        Isoelectric Point: 5.1938

>NTDB_id=909558 SM123_RS08715 WP_070465015.1 1800413..1802398(-) (amiA3) [Streptococcus lingualis strain S5]
MKKGKVFAVAGVTLLAAGLLAACSSSNTSKASSGEDKNYGYVYTSDPTTLDYTISSKAATHDITTNVVDGLLENDKYGNL
VPSLAEDWSVSKDGLTYTYKIRKGVKWYDADGEEHGEVTAKDFVTGLKHAADKKSEELPLVQGSIKGLDDYVQGKTTDFS
QVGVKAVDDYTLQYTLNKPETFWNSKTTNGILFPISTEFLKSKGDDFGQPNDVKSILANGPFLLKSITSKSSVVFEKNDN
YWDKKNVHLKEVKYTYYDGSDQDSLARGFSDGAYTKARLFPASSNFATVEKKYKDDIFTTPAGSGVAVLGFNLDRQSYKH
TAKKSDAEKSSTKKAILNKDFRQAVTFALNRESYSAQVNGKEFAKPAIRNTYVAPAFVQVDGKDFGNVVADKLTTYGDQW
KGINLADGQDGLYNKDKAKAQLEKAKAELQKDGVQFPIHIDVPVAQNSTNFVSRMQSLKQTVEDTLGKDNVVLDLQMMDS
DEVLNITLNVPSAADADWDLQGMVGWNPDYDDPSTYLDTLQPASEDQTKVYLGFAGGVDNPSAKAVGLDEFAKLLDDANN
ETQDVVKRYEKYAAAQAWLTDSAIVIPTMSSTGAATVVSKVVPFSEPSSQTGNKGSTYLKYVEVQDEPVTKKQYDEALKK
WQKEKAESNKKAQQDLEKHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=909558 SM123_RS08715 WP_070465015.1 1800413..1802398(-) (amiA3) [Streptococcus lingualis strain S5]
ATGAAAAAAGGTAAAGTATTCGCAGTTGCCGGAGTAACACTCCTTGCAGCTGGATTGTTAGCTGCATGTTCTAGTTCAAA
TACTAGCAAAGCAAGCTCAGGCGAAGACAAAAACTATGGTTATGTCTACACTTCAGATCCAACAACTTTGGACTATACAA
TTTCTTCTAAAGCTGCTACCCATGACATCACTACAAATGTGGTAGACGGTTTGTTAGAAAATGATAAATACGGTAACCTT
GTACCTTCACTTGCGGAAGACTGGTCTGTTTCTAAAGATGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATG
GTATGATGCGGATGGTGAAGAACACGGCGAAGTGACTGCCAAAGACTTCGTGACTGGTTTGAAACACGCTGCTGATAAAA
AATCAGAAGAACTTCCACTAGTTCAAGGCTCAATCAAAGGCTTGGATGATTATGTGCAAGGAAAAACTACAGACTTCAGC
CAAGTTGGTGTCAAAGCGGTTGATGATTACACACTTCAATACACATTGAACAAACCTGAAACTTTCTGGAACTCTAAAAC
GACTAACGGAATTTTGTTCCCAATAAGCACAGAGTTCTTGAAGAGTAAGGGAGATGATTTTGGTCAACCAAACGATGTGA
AGTCAATCCTTGCAAACGGACCTTTCCTTCTTAAATCAATCACTTCAAAATCATCTGTTGTATTTGAAAAGAATGACAAC
TACTGGGATAAGAAAAACGTTCACCTGAAAGAAGTAAAATATACTTATTACGATGGATCAGACCAAGATTCATTGGCACG
TGGATTCTCTGATGGTGCTTATACAAAAGCTCGCCTTTTCCCTGCAAGTTCAAACTTTGCAACTGTAGAGAAAAAATATA
AAGACGATATCTTTACTACACCAGCAGGATCAGGTGTAGCAGTTCTTGGCTTTAACCTTGATCGTCAATCTTACAAACAC
ACTGCTAAGAAATCCGATGCTGAAAAATCTTCTACTAAGAAAGCAATTTTGAACAAAGATTTCCGTCAGGCCGTCACTTT
TGCCTTGAACCGTGAAAGCTACTCAGCACAAGTCAATGGTAAAGAATTTGCTAAACCAGCTATCCGTAATACATATGTTG
CACCTGCATTCGTACAAGTAGATGGAAAAGACTTCGGAAATGTAGTTGCAGATAAGTTGACTACTTATGGAGACCAATGG
AAGGGTATCAACCTTGCAGATGGTCAAGATGGTCTTTACAACAAAGATAAAGCGAAAGCACAACTTGAAAAAGCCAAAGC
TGAACTTCAAAAAGATGGTGTTCAATTCCCAATTCATATTGATGTACCGGTAGCACAAAATTCTACAAACTTTGTTTCAC
GGATGCAATCTCTGAAACAAACTGTGGAAGATACTCTTGGTAAAGACAATGTCGTTCTTGATCTTCAAATGATGGACTCA
GACGAAGTGTTGAATATTACTTTGAATGTGCCATCAGCTGCAGACGCAGACTGGGATCTTCAAGGAATGGTAGGATGGAA
CCCAGACTATGATGATCCATCAACTTACCTTGATACTCTTCAACCAGCTTCTGAGGACCAAACAAAAGTTTACCTTGGTT
TTGCAGGTGGTGTAGATAACCCATCAGCAAAAGCTGTAGGTTTGGATGAGTTTGCAAAACTTCTTGACGATGCAAACAAC
GAAACACAAGATGTTGTGAAACGTTATGAAAAATACGCAGCAGCTCAAGCTTGGTTGACAGATAGTGCGATTGTTATTCC
AACGATGTCAAGTACAGGTGCTGCAACAGTTGTTTCTAAGGTAGTTCCATTCTCTGAACCATCATCACAAACAGGTAACA
AAGGTTCAACATACTTGAAATACGTTGAAGTTCAAGATGAGCCGGTTACTAAGAAACAATACGATGAAGCCCTTAAGAAA
TGGCAAAAAGAAAAAGCTGAGTCAAACAAAAAAGCTCAACAAGATCTTGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.036

100

0.593
  amiA3 Streptococcus thermophilus LMG 18311

58.584

100

0.588
  amiA Streptococcus salivarius strain HSISS4

58.157

100

0.582