Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SM123_RS08710 Genome accession   NZ_CP139419
Coordinates   1798840..1800339 (-) Length   499 a.a.
NCBI ID   WP_021154493.1    Uniprot ID   A0A4Q2FB53
Organism   Streptococcus lingualis strain S5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793840..1805339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS08695 (SM123_08695) amiF 1795898..1796824 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  SM123_RS08700 (SM123_08700) amiE 1796835..1797902 (-) 1068 WP_070665174.1 ABC transporter ATP-binding protein Regulator
  SM123_RS08705 (SM123_08705) amiD 1797914..1798840 (-) 927 WP_049488657.1 oligopeptide ABC transporter permease OppC Regulator
  SM123_RS08710 (SM123_08710) amiC 1798840..1800339 (-) 1500 WP_021154493.1 ABC transporter permease Regulator
  SM123_RS08715 (SM123_08715) amiA3 1800413..1802398 (-) 1986 WP_070465015.1 peptide ABC transporter substrate-binding protein Regulator
  SM123_RS08720 (SM123_08720) - 1802604..1803845 (+) 1242 WP_049475085.1 serine hydrolase -
  SM123_RS08725 (SM123_08725) sufB 1803904..1805316 (-) 1413 WP_003010279.1 Fe-S cluster assembly protein SufB -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55915.90 Da        Isoelectric Point: 10.0851

>NTDB_id=909557 SM123_RS08710 WP_021154493.1 1798840..1800339(-) (amiC) [Streptococcus lingualis strain S5]
MKKYVFMRILRSLVSIFLVTTLTYMIIYTLTPRNLIFKNDPNYNKVAKTKDSKINYENTVYDRMGYLEYMDSKSLQQKAS
KEDSSVTVDATTANEKIYKEYINKLGHGWQLKRFPESKSFYAVREIPVFERVISFYANLIQFDHPGWVKDASNPNLKRYI
RIENDPSIGWSVVGSGTKHKYLLYFNGQFPYVHQNFVTLNLGNSYPTYSNTPVLQVITQGQGTTKKSEVNFPTGKKTSSI
DIYSRTYKSPSKADSQDISRFGKGDAYTATLSNYENPSMIASSSIIGLIGIAIAYLIAIPLGSYMALFKNSWFDSISTAT
LTFMMSLPTIALVYIVRLAGSFVGLPDSFPVLGAQDWRSYVLPSLILGLLSAPFIAVWIRRYMIDIHSQDFVRFARSKGL
SEREISRKHIFKNAMVPLVSGIPGSIIGVISGATLTETVFAFPGMGKMLIDSIKASNNTMVIGLVFIFTSLGIFAAMLGD
ILMTVLDPRIKLTNTKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=909557 SM123_RS08710 WP_021154493.1 1798840..1800339(-) (amiC) [Streptococcus lingualis strain S5]
ATGAAAAAATATGTTTTTATGCGTATTTTGCGTTCGTTAGTGTCGATCTTTCTCGTCACGACATTAACCTACATGATTAT
CTATACGCTAACACCGAGAAATCTCATCTTTAAAAATGACCCTAACTACAATAAAGTAGCGAAGACAAAGGATTCGAAGA
TCAACTACGAAAATACAGTCTACGATCGCATGGGTTATTTGGAATACATGGATTCAAAGAGCTTGCAACAAAAAGCAAGT
AAAGAAGATTCTTCTGTAACAGTTGATGCGACGACTGCTAATGAAAAGATCTATAAGGAATACATTAACAAATTAGGTCA
TGGTTGGCAGTTGAAACGTTTCCCGGAAAGTAAGTCTTTCTATGCGGTGCGTGAAATTCCGGTTTTTGAACGTGTCATCA
GCTTCTATGCGAATTTGATTCAGTTTGATCATCCAGGTTGGGTGAAAGATGCCTCAAATCCAAACCTCAAACGCTATATC
CGTATTGAAAATGATCCATCTATTGGTTGGTCAGTAGTAGGTTCTGGTACGAAACACAAATACCTCTTGTACTTTAATGG
TCAATTCCCATATGTACACCAAAACTTTGTAACCTTAAACCTTGGAAATTCATATCCAACTTATTCAAATACCCCTGTTC
TTCAAGTTATTACCCAAGGACAAGGAACGACTAAGAAGAGTGAAGTGAACTTCCCAACAGGTAAAAAGACATCTTCAATC
GATATCTACTCACGTACCTACAAATCACCAAGTAAGGCAGACTCACAAGACATCAGTCGATTTGGTAAAGGGGACGCTTA
TACAGCAACGTTGAGCAACTATGAGAATCCATCAATGATTGCATCTTCTTCAATCATTGGTTTAATTGGTATTGCGATTG
CTTACTTGATTGCGATCCCATTAGGATCTTACATGGCTCTTTTCAAGAACTCATGGTTTGATAGCATCTCAACAGCAACC
TTGACATTTATGATGTCTCTTCCAACTATTGCCCTTGTTTACATTGTGCGTCTAGCAGGTTCATTTGTTGGACTTCCAGA
CTCATTCCCAGTACTTGGAGCACAGGACTGGCGTTCATATGTATTGCCGTCTCTGATTCTTGGTTTGTTGAGTGCGCCAT
TTATCGCAGTTTGGATTCGTCGTTACATGATAGATATCCATTCGCAAGATTTCGTCCGTTTTGCTCGTTCAAAAGGATTG
TCAGAACGTGAGATCTCAAGAAAACACATCTTCAAAAATGCGATGGTTCCATTGGTATCTGGTATTCCAGGTTCTATCAT
TGGAGTTATCTCAGGTGCGACGTTGACTGAAACAGTCTTCGCTTTCCCAGGTATGGGTAAAATGTTGATTGACTCTATTA
AAGCATCAAACAACACCATGGTCATCGGACTTGTCTTCATCTTCACATCACTTGGTATCTTTGCTGCCATGTTAGGTGAT
ATCTTGATGACAGTGCTTGATCCACGGATTAAATTAACGAATACGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q2FB53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

71.343

100

0.713
  amiC Streptococcus thermophilus LMD-9

71.142

100

0.711
  amiC Streptococcus thermophilus LMG 18311

71.142

100

0.711