Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SM123_RS08705 Genome accession   NZ_CP139419
Coordinates   1797914..1798840 (-) Length   308 a.a.
NCBI ID   WP_049488657.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1792914..1803840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS08695 (SM123_08695) amiF 1795898..1796824 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  SM123_RS08700 (SM123_08700) amiE 1796835..1797902 (-) 1068 WP_070665174.1 ABC transporter ATP-binding protein Regulator
  SM123_RS08705 (SM123_08705) amiD 1797914..1798840 (-) 927 WP_049488657.1 oligopeptide ABC transporter permease OppC Regulator
  SM123_RS08710 (SM123_08710) amiC 1798840..1800339 (-) 1500 WP_021154493.1 ABC transporter permease Regulator
  SM123_RS08715 (SM123_08715) amiA3 1800413..1802398 (-) 1986 WP_070465015.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34598.65 Da        Isoelectric Point: 9.8986

>NTDB_id=909556 SM123_RS08705 WP_049488657.1 1797914..1798840(-) (amiD) [Streptococcus lingualis strain S5]
MATIDKNKFQFVKRDDFASEVIDAPAYSYWKSVFRQFLKKRTTIIMLAILIGILLMSFVYPMFSNFDYNDVSKVNDFSAR
LNPPSAKAFFGTDNNGKSLFDGVWFGARNSIIISFIATVINVVVGVIVGGIWGISKSIDRIMMEVYNVISNIPFMLIVIV
LTYSMGSGFWNLILAMSLTGWIGIAYTIRVQIMRYRDLEYNLASRTLGTPTMKIVTKNILPQLVSVIVTQTSQLLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTVLILVSLSFFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=909556 SM123_RS08705 WP_049488657.1 1797914..1798840(-) (amiD) [Streptococcus lingualis strain S5]
ATGGCTACAATCGATAAAAATAAATTTCAGTTTGTAAAACGCGATGACTTTGCCTCTGAAGTAATCGATGCTCCAGCGTA
TTCATACTGGAAATCTGTATTTAGACAGTTCTTGAAGAAAAGAACCACGATCATTATGCTTGCTATTTTGATTGGGATTC
TCTTGATGAGTTTTGTCTATCCTATGTTTTCAAATTTTGATTACAACGACGTAAGTAAGGTAAATGACTTTTCAGCACGT
TTGAATCCACCAAGTGCCAAAGCTTTCTTTGGTACAGATAATAACGGTAAATCCCTCTTTGATGGAGTTTGGTTTGGTGC
TCGGAATTCAATTATCATTTCCTTCATCGCAACTGTTATTAACGTGGTAGTCGGAGTTATCGTTGGTGGAATTTGGGGGA
TCTCAAAATCTATCGACCGTATCATGATGGAAGTTTATAACGTTATTTCAAACATTCCATTTATGTTGATCGTTATCGTC
TTGACTTACTCAATGGGATCTGGTTTCTGGAACTTGATTCTTGCCATGTCCTTAACAGGATGGATCGGAATTGCTTATAC
CATTCGTGTCCAAATCATGCGTTACCGTGATTTGGAGTACAACCTTGCCAGCCGAACATTAGGAACACCAACAATGAAAA
TTGTTACGAAAAATATTTTACCTCAATTGGTATCTGTTATCGTGACACAAACATCACAGTTGCTTCCAAGCTTTATTTCT
TACGAAGCCTTCCTTTCCTTCTTCGGACTTGGTCTTCCAATCACAGTTCCAAGTTTGGGACGGTTGATTTCTGACTATTC
TCAAAACGTAACTACAAATGCCTACCTATTCTGGATTCCGCTTACTGTTTTGATTTTAGTATCCTTGTCATTCTTTATCG
TCGGACAAAACTTGGCCGATGCCAGCGACCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

79.545

100

0.795
  amiD Streptococcus thermophilus LMG 18311

78.247

100

0.782
  amiD Streptococcus thermophilus LMD-9

78.247

100

0.782