Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SM123_RS08700 Genome accession   NZ_CP139419
Coordinates   1796835..1797902 (-) Length   355 a.a.
NCBI ID   WP_070665174.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1791835..1802902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS08695 (SM123_08695) amiF 1795898..1796824 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  SM123_RS08700 (SM123_08700) amiE 1796835..1797902 (-) 1068 WP_070665174.1 ABC transporter ATP-binding protein Regulator
  SM123_RS08705 (SM123_08705) amiD 1797914..1798840 (-) 927 WP_049488657.1 oligopeptide ABC transporter permease OppC Regulator
  SM123_RS08710 (SM123_08710) amiC 1798840..1800339 (-) 1500 WP_021154493.1 ABC transporter permease Regulator
  SM123_RS08715 (SM123_08715) amiA3 1800413..1802398 (-) 1986 WP_070465015.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39461.05 Da        Isoelectric Point: 4.5823

>NTDB_id=909555 SM123_RS08700 WP_070665174.1 1796835..1797902(-) (amiE) [Streptococcus lingualis strain S5]
MTSNNNIILSAQDIVVEFDVRDRVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIKYRGQEL
TDLKSNKDWENIRGSKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKTAKEAKEMALDYMEKVGIPDAERRFDEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQKEYQFTVIFITHDLGVVASIADKVAVMYAGEIVE
FGKVEEIFYDPKHPYTWSLLSSLPQLSTSDGDLYSIPGTPPSLYAPIKGDAFALRSDYAMQIDFEEEAPAFKVTDTHWAK
TWLLHPDAPTVHKPEVIENLHEKIGSKMGFTQITE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=909555 SM123_RS08700 WP_070665174.1 1796835..1797902(-) (amiE) [Streptococcus lingualis strain S5]
ATGACATCAAATAACAATATTATTTTATCTGCTCAAGATATCGTAGTGGAATTTGACGTGCGCGATCGCGTACTGACAGC
GATTCGTGGCGTATCGCTTGAGCTAGTAGAAGGTGAAGTTCTTGCCTTGGTTGGTGAGTCAGGTTCAGGGAAATCAGTTT
TGACAAAAACATTCACCGGAATGTTAGAAGATAACGGCCGTATTGCCCAAGGTTCGATTAAATACCGTGGTCAAGAATTG
ACAGATTTGAAATCGAATAAAGATTGGGAAAATATTCGTGGGTCTAAGATCGCTACAATTTTCCAAGACCCAATGACAAG
TTTGGACCCAATCAACACAATTGGTTCACAAATTACAGAAGTCATTATCAAACACCAAGGGAAAACAGCTAAAGAAGCTA
AAGAAATGGCATTGGACTATATGGAGAAAGTTGGAATTCCAGATGCGGAACGTCGTTTTGATGAGTATCCATTTCAATAT
TCAGGTGGGATGCGTCAACGGATCGTTATTGCCATCGCCTTAGCCTGCCGTCCAGATATCTTGATCTGTGATGAACCAAC
AACAGCCCTTGACGTAACCATTCAAGCGCAAATCATTGATTTGTTGAAATCCCTTCAAAAAGAATACCAATTTACAGTTA
TCTTTATCACCCACGACTTAGGTGTGGTTGCAAGTATTGCAGATAAAGTAGCCGTTATGTATGCTGGAGAAATTGTTGAG
TTTGGTAAAGTAGAAGAAATTTTCTACGATCCAAAACATCCATACACATGGAGCTTGCTTTCAAGCTTGCCTCAATTGTC
AACCTCAGATGGTGATCTTTACTCTATTCCAGGAACTCCGCCATCATTGTATGCTCCAATTAAAGGAGATGCCTTCGCAC
TTCGTTCAGACTATGCAATGCAGATTGATTTTGAAGAAGAGGCACCTGCTTTCAAAGTGACCGATACTCACTGGGCTAAG
ACATGGTTGCTCCATCCAGATGCACCAACAGTTCATAAACCAGAAGTAATCGAAAACCTTCACGAAAAGATTGGCTCAAA
AATGGGCTTCACTCAAATTACAGAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

83.003

99.437

0.825
  amiE Streptococcus thermophilus LMG 18311

82.153

99.437

0.817
  amiE Streptococcus thermophilus LMD-9

82.153

99.437

0.817
  oppD Streptococcus mutans UA159

57.602

96.338

0.555