Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SM123_RS08695 Genome accession   NZ_CP139419
Coordinates   1795898..1796824 (-) Length   308 a.a.
NCBI ID   WP_003010296.1    Uniprot ID   V8BAC4
Organism   Streptococcus lingualis strain S5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1790898..1801824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS08695 (SM123_08695) amiF 1795898..1796824 (-) 927 WP_003010296.1 ATP-binding cassette domain-containing protein Regulator
  SM123_RS08700 (SM123_08700) amiE 1796835..1797902 (-) 1068 WP_070665174.1 ABC transporter ATP-binding protein Regulator
  SM123_RS08705 (SM123_08705) amiD 1797914..1798840 (-) 927 WP_049488657.1 oligopeptide ABC transporter permease OppC Regulator
  SM123_RS08710 (SM123_08710) amiC 1798840..1800339 (-) 1500 WP_021154493.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 35017.00 Da        Isoelectric Point: 6.2915

>NTDB_id=909554 SM123_RS08695 WP_003010296.1 1795898..1796824(-) (amiF) [Streptococcus lingualis strain S5]
MTEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSAGEIIYDGRKINGKNSHS
EKSELIRKIQMIFQDPAASLNERATVDYIISEGLINHHLFNSEEERQEKVKNIMHEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMEPEFVIADEPISALDVSVRAQVLNLLKKFQRELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
HPIHPYTQSLLSAVPIPDPILERKKVLKIYDPEQHDYSEDKPQMVEIKPGHYVWANKAEENKYRQEYK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=909554 SM123_RS08695 WP_003010296.1 1795898..1796824(-) (amiF) [Streptococcus lingualis strain S5]
ATGACTGAAAAATTAGTTGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAAAAATTCGTTGCTGTAAAGAA
CGCCAACTTTTTCATTAATAAGGGAGAAACGTTCTCTCTTGTTGGTGAATCAGGAAGTGGTAAGACAACAATTGGGCGTG
CGATCATCGGTTTGAATGATACAAGTGCTGGAGAAATTATTTATGACGGTCGCAAGATCAACGGAAAAAACTCTCATAGT
GAAAAATCAGAGTTGATCCGTAAAATTCAAATGATCTTCCAAGACCCAGCAGCAAGTTTGAATGAACGTGCAACAGTTGA
TTATATTATCTCTGAAGGTTTGATCAACCACCATTTGTTTAACAGCGAAGAAGAACGTCAGGAAAAAGTAAAAAATATTA
TGCATGAAGTTGGGCTTCTAGCAGAACATTTGACACGTTATCCTCACGAATTCTCAGGTGGGCAACGTCAACGGATCGGT
ATTGCCCGTGCACTTGTCATGGAACCAGAATTTGTCATTGCGGATGAACCAATCTCAGCTCTTGACGTTTCAGTACGTGC
ACAGGTCTTGAACCTTTTGAAAAAATTCCAAAGAGAATTAGGCTTGACCTACCTCTTTATCGCCCATGACTTGTCAGTTG
TACGCTTCATTTCCGACCGTATTGCAGTTATCTATAAAGGGGTTATTGTAGAAGTAGCAGAAACTGAAGAGCTATTTAAC
CACCCAATCCATCCATACACACAATCCCTACTTTCAGCTGTCCCAATTCCAGATCCAATTCTAGAACGTAAAAAAGTTCT
AAAAATCTACGATCCAGAACAACATGATTATTCTGAAGATAAACCACAAATGGTTGAAATTAAACCAGGTCATTATGTAT
GGGCTAACAAAGCTGAAGAAAACAAATACAGACAAGAATATAAATAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BAC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

84.641

99.351

0.841
  amiF Streptococcus thermophilus LMG 18311

84.314

99.351

0.838
  amiF Streptococcus thermophilus LMD-9

83.987

99.351

0.834