Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SM123_RS03225 Genome accession   NZ_CP139419
Coordinates   706095..706685 (+) Length   196 a.a.
NCBI ID   WP_155126695.1    Uniprot ID   A0A6A8V3N8
Organism   Streptococcus lingualis strain S5     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 701095..711685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS03215 (SM123_03215) mgtA 702457..705117 (+) 2661 WP_023918811.1 magnesium-translocating P-type ATPase -
  SM123_RS03220 (SM123_03220) upp 705337..705966 (+) 630 WP_003005574.1 uracil phosphoribosyltransferase -
  SM123_RS03225 (SM123_03225) clpP 706095..706685 (+) 591 WP_155126695.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SM123_RS03230 (SM123_03230) - 706963..707241 (+) 279 WP_023918810.1 DUF2129 domain-containing protein -
  SM123_RS03235 (SM123_03235) - 707350..708507 (+) 1158 WP_023918808.1 ABC transporter substrate-binding protein -
  SM123_RS03240 (SM123_03240) - 708589..709458 (+) 870 WP_021153669.1 branched-chain amino acid ABC transporter permease -
  SM123_RS03245 (SM123_03245) - 709462..710409 (+) 948 WP_205011637.1 branched-chain amino acid ABC transporter permease -
  SM123_RS03250 (SM123_03250) - 710409..711173 (+) 765 WP_003005595.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21439.56 Da        Isoelectric Point: 4.8265

>NTDB_id=909526 SM123_RS03225 WP_155126695.1 706095..706685(+) (clpP) [Streptococcus lingualis strain S5]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYINTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILAENSGQ
SIKKVHADAERDNWMSAQETLEYGFIDEIMANNKLG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=909526 SM123_RS03225 WP_155126695.1 706095..706685(+) (clpP) [Streptococcus lingualis strain S5]
ATGATTCCAGTAGTTATTGAACAAACCAGTCGTGGAGAACGTTCTTACGATATTTATTCCCGTCTGTTGAAAGATCGAAT
TATCATGGTAACAGGACCCGTTGAGGACCAAATGGCTAACTCCATTATCGCTCAATTGCTCTTCTTGGATGCCCAAGATA
ATACAAAAGATATCTATATGTATATCAATACACCAGGAGGCTCTGTCTCTGCAGGTCTTGCCATCGTAGATACCATGAAC
TTTATCAAGTCAGATGTCCAAACCATTGTCATGGGGATGGCAGCTTCTATGGGAACAATTATCGCTTCAAGCGGTGCGAA
GGGCAAACGCTTCATGTTGCCAAACGCCGAGTACATGATTCACCAACCAATGGGTGGTACTGGTGGTGGTACCCAACAAA
CCGATATGGCGATTGCAGCAGAACACTTGCTCAAAACACGGAATAACTTGGAAAAAATCCTTGCGGAAAATTCAGGTCAA
TCCATTAAAAAAGTGCATGCTGATGCGGAACGTGATAATTGGATGAGCGCACAAGAAACACTTGAATATGGCTTTATTGA
TGAAATCATGGCCAATAATAAATTGGGCTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8V3N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

93.846

99.49

0.934
  clpP Streptococcus pneumoniae D39

93.846

99.49

0.934
  clpP Streptococcus pneumoniae R6

93.846

99.49

0.934
  clpP Streptococcus pneumoniae TIGR4

93.846

99.49

0.934
  clpP Streptococcus thermophilus LMG 18311

93.333

99.49

0.929
  clpP Streptococcus thermophilus LMD-9

93.333

99.49

0.929
  clpP Streptococcus pyogenes JRS4

88.718

99.49

0.883
  clpP Streptococcus pyogenes MGAS315

88.718

99.49

0.883
  clpP Streptococcus mutans UA159

88.205

99.49

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.615

99.49

0.842
  clpP Lactococcus lactis subsp. cremoris KW2

84.103

99.49

0.837
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.216

98.98

0.566