Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SM121_RS04430 Genome accession   NZ_CP139418
Coordinates   927872..928462 (+) Length   196 a.a.
NCBI ID   WP_155126695.1    Uniprot ID   A0A6A8V3N8
Organism   Streptococcus dentalis strain S1     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 922872..933462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS04420 (SM121_04420) mgtA 924233..926893 (+) 2661 WP_320911251.1 magnesium-translocating P-type ATPase -
  SM121_RS04425 (SM121_04425) upp 927114..927743 (+) 630 WP_003005574.1 uracil phosphoribosyltransferase -
  SM121_RS04430 (SM121_04430) clpP 927872..928462 (+) 591 WP_155126695.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SM121_RS04435 (SM121_04435) - 928740..929018 (+) 279 WP_151378658.1 DUF2129 domain-containing protein -
  SM121_RS04440 (SM121_04440) - 929127..930284 (+) 1158 WP_320911252.1 ABC transporter substrate-binding protein -
  SM121_RS04445 (SM121_04445) - 930366..931235 (+) 870 WP_049515409.1 branched-chain amino acid ABC transporter permease -
  SM121_RS04450 (SM121_04450) - 931239..932186 (+) 948 WP_003008278.1 branched-chain amino acid ABC transporter permease -
  SM121_RS04455 (SM121_04455) - 932186..932950 (+) 765 WP_003005595.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21439.56 Da        Isoelectric Point: 4.8265

>NTDB_id=909485 SM121_RS04430 WP_155126695.1 927872..928462(+) (clpP) [Streptococcus dentalis strain S1]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYINTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEKILAENSGQ
SIKKVHADAERDNWMSAQETLEYGFIDEIMANNKLG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=909485 SM121_RS04430 WP_155126695.1 927872..928462(+) (clpP) [Streptococcus dentalis strain S1]
ATGATTCCAGTAGTTATTGAACAAACCAGTCGTGGAGAACGTTCTTACGATATTTATTCCCGTCTGTTGAAAGATCGAAT
TATCATGGTAACAGGACCAGTTGAGGACCAAATGGCTAACTCCATTATCGCTCAATTGCTCTTCTTGGATGCCCAAGATA
ATACAAAAGATATCTATATGTATATCAATACCCCAGGGGGCTCTGTCTCAGCAGGTCTTGCCATTGTAGATACTATGAAC
TTTATCAAGTCAGATGTCCAAACCATTGTTATGGGGATGGCTGCTTCTATGGGAACTATTATCGCTTCAAGCGGTGCGAA
GGGCAAACGCTTCATGTTGCCAAACGCCGAGTATATGATTCACCAACCAATGGGTGGTACTGGTGGTGGTACCCAACAAA
CCGATATGGCGATTGCAGCAGAACACTTGCTCAAAACACGGAATAACTTGGAAAAAATCCTTGCGGAAAATTCAGGTCAA
TCCATTAAAAAAGTGCATGCTGATGCGGAGCGTGACAATTGGATGAGCGCACAAGAAACACTTGAATATGGCTTTATTGA
TGAAATCATGGCCAATAATAAATTGGGCTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8V3N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

93.846

99.49

0.934
  clpP Streptococcus pneumoniae D39

93.846

99.49

0.934
  clpP Streptococcus pneumoniae R6

93.846

99.49

0.934
  clpP Streptococcus pneumoniae TIGR4

93.846

99.49

0.934
  clpP Streptococcus thermophilus LMG 18311

93.333

99.49

0.929
  clpP Streptococcus thermophilus LMD-9

93.333

99.49

0.929
  clpP Streptococcus pyogenes JRS4

88.718

99.49

0.883
  clpP Streptococcus pyogenes MGAS315

88.718

99.49

0.883
  clpP Streptococcus mutans UA159

88.205

99.49

0.878
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.615

99.49

0.842
  clpP Lactococcus lactis subsp. cremoris KW2

84.103

99.49

0.837
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.216

98.98

0.566