Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SOI75_RS15820 Genome accession   NZ_CP139282
Coordinates   3258314..3260479 (+) Length   721 a.a.
NCBI ID   WP_002116833.1    Uniprot ID   A0A009N281
Organism   Acinetobacter pittii strain AE13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3253314..3265479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI75_RS15800 (SOI75_15800) pilM 3255237..3256295 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI75_RS15805 (SOI75_15805) pilN 3256295..3256936 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI75_RS15810 (SOI75_15810) pilO 3256933..3257712 (+) 780 WP_068535133.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI75_RS15815 (SOI75_15815) pilP 3257724..3258251 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  SOI75_RS15820 (SOI75_15820) pilQ 3258314..3260479 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  SOI75_RS15825 (SOI75_15825) aroK 3260491..3261060 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI75_RS15830 (SOI75_15830) aroB 3261089..3262171 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -
  SOI75_RS15835 (SOI75_15835) - 3262188..3263057 (+) 870 WP_002117066.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78122.58 Da        Isoelectric Point: 6.3496

>NTDB_id=908721 SOI75_RS15820 WP_002116833.1 3258314..3260479(+) (pilQ) [Acinetobacter pittii strain AE13]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPMQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLIQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGGNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAQAQDIMSLITQGSNNSNGMQRTSDGGNSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVSGAAPN
GELILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=908721 SOI75_RS15820 WP_002116833.1 3258314..3260479(+) (pilQ) [Acinetobacter pittii strain AE13]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACTAATATTGTACCGATGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCCTATCAGCTTGAGAATCCTTCACGTTTGATTTTAGATTTTAATAAAGCGCAGCAGAATTTAATACAGTCAAAAGTA
GCGATTGGAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCCGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACTACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAAGCTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGCCTTATCGTT
ATTGACCTGTTGGGAGGTAATACCCCTGTTGATGTGCAACAACAAGGTAGCAAAGTTGTAGTAAGAACGTTAGGCTCTAA
AATTCCTACACATCTAGCTAAACGCTTAAATGTAAATGATTTTGCGACGCCTGTTTCGACCATTGAATCTTATAATGAAA
AAGGCAATGGCGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCAGAAAATAAATTAACCATT
AGCCTCAAGCGTCCGCAGGACAAAAATGTAACCTCTTTATATAAGACGCCTAATTACTCTGGTAATAAGCTTTCTCTCGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAGTTACTTGCTGATTTTACTGGCATTAATATGGTCGCGGCTGATAGTG
TGCAAGGTAATATCACTTTGCGTTTAAAAGATGTACCATGGGACCAAGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGAAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCTGAAGAAGAAGAAGCAAAAGC
TGTTGCACAGAGCGTGAAATTAGCCCCATTACAAACTGAGTATATTCAACTTAAATATGCGCAAGCTCAGGATATTATGA
GTTTAATTACTCAAGGCTCAAATAATAGCAATGGTATGCAGCGCACATCTGATGGTGGAAATTCTACATCTACTAATTTA
AATACTGGTGTTGATAGTTTAGGTAATAATGTAGGAAGTTTATTGAGTCCCCGTGGAACAATTACTCAAGATGATCGTAC
CAATACCTTAATTATTAATGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATCTGTTGGATGTACAAGTTA
AACAGGTTATGGTTGAGGCGCGAATTGTAAGAGCATCTACTTCTTTTACCAAAGAGCTCGGTGTTAAATGGGGTATATTA
TCGCAAGGGATCACTAACAATAATAATTTGTTAGTTGGTGGTAGTGAAACGACCTTGTGGAATTTACGAGAGCCCAAAAA
GGATGAGACTACGGGTGGTTATAAATACACGATTGAACGTCCAGATAACTTAAATGTCGATTTAGGTGTAACCAATCCGG
CTGGGAGTATTGCCTTTGGCTTGATTAGTATGTCTGATTTTATGCTTGATCTTGAACTTTCTGCATTACAAGCTGATGGC
TATGGTGAGGTTATTTCTACCCCTAAAGTAATGACTGCAGATAAACAGCCTGCAAAAGTTGCAACAGGTCAACAGGTCCC
ATATCAAACTACAACGAATTCTGCTGCTGGTGCTACAGCAAGTACCTCTTTTAAAGATGCACTATTAAGCCTAGATGTTA
CCCCGAGTATTACGCCTGATGGTAAAATTCAAATGAAATTGGATATTTCAAAGGATTCGGTTTCGGGTGCGGCTCCTAAT
GGTGAATTGATCCTAAATAAAAATAATATCAAGACAAATGTGTTGGTGAATAATGGTGAGACAGTCATTTTAGGAGGGGT
GTTTGAGCAGACAACCCTTAACTCTCAAACCAAAGTTCCTTTCTTTGGGGATTTACCGGGAATTGGACGCCTATTTAGGA
AAGATCAGAAATCTGATGATAAGCAAGAGTTACTGATTTTCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(40-118)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009N281

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

92.094

100

0.921
  pilQ Acinetobacter baumannii strain A118

91.956

100

0.92
  comQ Acinetobacter baylyi ADP1

74.965

100

0.752
  pilQ Pseudomonas aeruginosa PAK

39.86

99.168

0.395