Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SOI75_RS15805 Genome accession   NZ_CP139282
Coordinates   3256295..3256936 (+) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain AE13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3251295..3261936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI75_RS15785 (SOI75_15785) - 3251339..3251671 (+) 333 WP_002116981.1 hypothetical protein -
  SOI75_RS15790 (SOI75_15790) rrmA 3251674..3252498 (+) 825 WP_081310304.1 putative RNA methyltransferase -
  SOI75_RS15795 (SOI75_15795) ponA 3252514..3255075 (-) 2562 WP_320562603.1 penicillin-binding protein PBP1a -
  SOI75_RS15800 (SOI75_15800) pilM 3255237..3256295 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI75_RS15805 (SOI75_15805) pilN 3256295..3256936 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI75_RS15810 (SOI75_15810) pilO 3256933..3257712 (+) 780 WP_068535133.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI75_RS15815 (SOI75_15815) pilP 3257724..3258251 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  SOI75_RS15820 (SOI75_15820) pilQ 3258314..3260479 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  SOI75_RS15825 (SOI75_15825) aroK 3260491..3261060 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=908718 SOI75_RS15805 WP_002116944.1 3256295..3256936(+) (pilN) [Acinetobacter pittii strain AE13]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=908718 SOI75_RS15805 WP_002116944.1 3256295..3256936(+) (pilN) [Acinetobacter pittii strain AE13]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685