Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SOI75_RS15815 Genome accession   NZ_CP139282
Coordinates   3257724..3258251 (+) Length   175 a.a.
NCBI ID   WP_017481730.1    Uniprot ID   A0A010ITU2
Organism   Acinetobacter pittii strain AE13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3252724..3263251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI75_RS15800 (SOI75_15800) pilM 3255237..3256295 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI75_RS15805 (SOI75_15805) pilN 3256295..3256936 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI75_RS15810 (SOI75_15810) pilO 3256933..3257712 (+) 780 WP_068535133.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI75_RS15815 (SOI75_15815) pilP 3257724..3258251 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  SOI75_RS15820 (SOI75_15820) pilQ 3258314..3260479 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  SOI75_RS15825 (SOI75_15825) aroK 3260491..3261060 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI75_RS15830 (SOI75_15830) aroB 3261089..3262171 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -
  SOI75_RS15835 (SOI75_15835) - 3262188..3263057 (+) 870 WP_002117066.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19253.42 Da        Isoelectric Point: 9.7299

>NTDB_id=908720 SOI75_RS15815 WP_017481730.1 3257724..3258251(+) (pilP) [Acinetobacter pittii strain AE13]
MKLKKILLSLGIGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=908720 SOI75_RS15815 WP_017481730.1 3257724..3258251(+) (pilP) [Acinetobacter pittii strain AE13]
ATGAAACTAAAGAAAATTTTACTTTCTCTGGGGATAGGCTTGGTTTTGGTTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCCGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGTGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A010ITU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88

100

0.88
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714