Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SOI75_RS15810 Genome accession   NZ_CP139282
Coordinates   3256933..3257712 (+) Length   259 a.a.
NCBI ID   WP_068535133.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AE13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3251933..3262712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI75_RS15795 (SOI75_15795) ponA 3252514..3255075 (-) 2562 WP_320562603.1 penicillin-binding protein PBP1a -
  SOI75_RS15800 (SOI75_15800) pilM 3255237..3256295 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI75_RS15805 (SOI75_15805) pilN 3256295..3256936 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI75_RS15810 (SOI75_15810) pilO 3256933..3257712 (+) 780 WP_068535133.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI75_RS15815 (SOI75_15815) pilP 3257724..3258251 (+) 528 WP_017481730.1 pilus assembly protein PilP Machinery gene
  SOI75_RS15820 (SOI75_15820) pilQ 3258314..3260479 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  SOI75_RS15825 (SOI75_15825) aroK 3260491..3261060 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI75_RS15830 (SOI75_15830) aroB 3261089..3262171 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29435.55 Da        Isoelectric Point: 5.7424

>NTDB_id=908719 SOI75_RS15810 WP_068535133.1 3256933..3257712(+) (pilO) [Acinetobacter pittii strain AE13]
MSPDELHDLSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENQNNSDPQVINGESQI
NASDSRNVHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=908719 SOI75_RS15810 WP_068535133.1 3256933..3257712(+) (pilO) [Acinetobacter pittii strain AE13]
ATGAGTCCTGATGAACTTCATGATCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTATGGCAGCTGGCCATTATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCTTTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAGGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTACAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAGGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGCGCGGTTGAAAACCAAAATAATAGTGATCCTCAAGTAATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGTACATATTCCTTCTATAAAGAAGTCAAAGCGAAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.286

86.486

0.772
  comO Acinetobacter baylyi ADP1

71.674

89.961

0.645