Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SOI80_RS01710 Genome accession   NZ_CP139270
Coordinates   361454..363580 (+) Length   708 a.a.
NCBI ID   WP_017481729.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG62     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356454..368580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS01690 (SOI80_01690) pilM 358405..359463 (+) 1059 WP_032006368.1 pilus assembly protein PilM Machinery gene
  SOI80_RS01695 (SOI80_01695) pilN 359463..360104 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI80_RS01700 (SOI80_01700) pilO 360101..360853 (+) 753 WP_032006367.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI80_RS01705 (SOI80_01705) pilP 360864..361391 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI80_RS01710 (SOI80_01710) pilQ 361454..363580 (+) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  SOI80_RS01715 (SOI80_01715) aroK 363592..364161 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI80_RS01720 (SOI80_01720) aroB 364190..365272 (+) 1083 WP_032006366.1 3-dehydroquinate synthase -
  SOI80_RS01725 (SOI80_01725) - 365289..366158 (+) 870 WP_032006365.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76722.19 Da        Isoelectric Point: 6.7721

>NTDB_id=908554 SOI80_RS01710 WP_017481729.1 361454..363580(+) (pilQ) [Acinetobacter pittii strain HCG62]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPTQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLTQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQVVAKPVSASAMQIQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVKTLGSKIPTHLAKRLNVNDFATPVSTIESYNDKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKIVNTSSKPSNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIRLNYAKAADVLKLIEETRDGKTAVANRTAGSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLIDVQIKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQPARVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=908554 SOI80_RS01710 WP_017481729.1 361454..363580(+) (pilQ) [Acinetobacter pittii strain HCG62]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCGTCTGCACAGGTCAGCAT
GACTAATATTGTACCGACGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCATATCAGCTTGAGAATCCTTCACGTTTGATTTTAGACTTTAATAAAGCGCAGCAGAATTTAACACAGTCAAAAGTA
GCGATTGGAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCCGATGATCAGCGTTCACGTTTAACTGTTAATTTGAAAGA
GGCAGGTGCTTTTACAACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAGGTTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAATCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGTCTTATTGTT
ATTGACCTGTTGGGGAGTAATACCCCTGTTGATGTGCAACAACAAGGCAGCAAAGTTGTAGTAAAAACTTTGGGTTCTAA
AATTCCTACTCATTTAGCTAAGCGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCTTATAATGATA
AAGGCAACGGTGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACCATC
AGTCTCAAGCGTCCTCAAGATAAAATTGTAAACACTTCATCTAAACCATCTAATTATTCTGGTAATAAGCTTTCTCTTGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAATTACTTGCTGATTTTACTGGCATTAATATGGTTGCGGCTGACAGTG
TGCAAGGTAACATCACTTTGCGCTTAAAAGATGTTCCATGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGTAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCAGAAGACGATGAGGCAAAAGC
TTTAGCACAAACTATTAAATTAGCACCGATCCAAACAGATTATATTCGTTTGAATTATGCAAAAGCAGCAGATGTCCTTA
AACTAATTGAAGAGACTCGTGATGGCAAGACAGCTGTCGCAAATCGTACAGCAGGTTCAGACTCTCTTGCTTTAGAAAGC
TTATTAAGCTCAAGAGGTAGTGCTGTTGCCGATACGCGTACTAATACTTTGATTGTAAATGATACAGCCCAAAATATTGA
TAAAGTTCGTAAAATGATTGATTTGATTGATGTACAGATCAAACAAGTCATGGTGGAAGCTCGAATTGTAAGAGCTTCTA
CTTCTTTTACTAAAGAGCTCGGTGTTAAATGGGGAATATTATCGCAAGGGATTACCAACAATAATAATTTATTAGTTGGT
GGTAGCGAAACGACCTTATGGAATTTACGAGAGCCCAAAAAGGATGAGACTACGGGTGGTTATAAATACACGATTGAACG
TCCAGATAACTTAAATGTCGATTTGGGTGTAACCAATCCGGCTGGAAGTATTGCCTTTGGCTTGATTAGTATGTCTGATT
TTATGCTTGATCTCGAACTTTCTGCATTACAAGCTGACGGTTATGGTGAGGTGATTTCTACACCTAAAGTGATGACCGCA
GACAAACAACCTGCGAGAGTGGCAACAGGTCAACAAGTTCCTTATCAAACCACGACGAATTCTGCTGCGGGTGCCACAGC
AAGTACATCATTTAAAGATGCACTATTAAGCCTAGATGTTACCCCGAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TGGATATTTCTAAGGATTCTGTAGCTGGCGAAGCACCTAATGGTGAATTAATTTTAAATAAAAATAATATTAATACCAAT
GTACTTGTTAATAATGGTGAGACAGTCATTTTAGGAGGGGTGTTTGAGCAGACTACTTCTAATTCACAAACCAAGGTTCC
TTTCTTTGGAGACATTCCTGTAGTTGGGCGTTTATTTAGAAAAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTT
TCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

AMIN domain (AMIN)

(39-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

84.882

100

0.864
  pilQ Acinetobacter baumannii strain A118

84.743

100

0.863
  comQ Acinetobacter baylyi ADP1

73.566

100

0.743
  pilQ Pseudomonas aeruginosa PAK

39.829

99.294

0.395