Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SOI80_RS01700 Genome accession   NZ_CP139270
Coordinates   360101..360853 (+) Length   250 a.a.
NCBI ID   WP_032006367.1    Uniprot ID   A0AAN4MGF9
Organism   Acinetobacter pittii strain HCG62     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355101..365853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS01685 (SOI80_01685) ponA 355682..358243 (-) 2562 WP_032006370.1 penicillin-binding protein PBP1a -
  SOI80_RS01690 (SOI80_01690) pilM 358405..359463 (+) 1059 WP_032006368.1 pilus assembly protein PilM Machinery gene
  SOI80_RS01695 (SOI80_01695) pilN 359463..360104 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI80_RS01700 (SOI80_01700) pilO 360101..360853 (+) 753 WP_032006367.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI80_RS01705 (SOI80_01705) pilP 360864..361391 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI80_RS01710 (SOI80_01710) pilQ 361454..363580 (+) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  SOI80_RS01715 (SOI80_01715) aroK 363592..364161 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI80_RS01720 (SOI80_01720) aroB 364190..365272 (+) 1083 WP_032006366.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28225.10 Da        Isoelectric Point: 4.8782

>NTDB_id=908552 SOI80_RS01700 WP_032006367.1 360101..360853(+) (pilO) [Acinetobacter pittii strain HCG62]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAAENPEHQEKNASASSVAP
DSSTANIQPK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=908552 SOI80_RS01700 WP_032006367.1 360101..360853(+) (pilO) [Acinetobacter pittii strain HCG62]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTCCT
TCAGCAATTTAACACGCTCGACATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTACTGGCTCTAGGGTATTTTGTTGCTATTCAACCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGTGCTGCAGAAAATCCTGAACATCAGGAAAAAAATGCTTCGGCTTCCTCGGTAGCACCT
GATTCTTCTACTGCTAACATACAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

83.6

100

0.836
  comO Acinetobacter baylyi ADP1

69.583

96

0.668