Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SOI80_RS01705 Genome accession   NZ_CP139270
Coordinates   360864..361391 (+) Length   175 a.a.
NCBI ID   WP_002116864.1    Uniprot ID   A0AAN4MGG3
Organism   Acinetobacter pittii strain HCG62     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355864..366391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS01690 (SOI80_01690) pilM 358405..359463 (+) 1059 WP_032006368.1 pilus assembly protein PilM Machinery gene
  SOI80_RS01695 (SOI80_01695) pilN 359463..360104 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI80_RS01700 (SOI80_01700) pilO 360101..360853 (+) 753 WP_032006367.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI80_RS01705 (SOI80_01705) pilP 360864..361391 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  SOI80_RS01710 (SOI80_01710) pilQ 361454..363580 (+) 2127 WP_017481729.1 type IV pilus secretin PilQ Machinery gene
  SOI80_RS01715 (SOI80_01715) aroK 363592..364161 (+) 570 WP_002116987.1 shikimate kinase AroK -
  SOI80_RS01720 (SOI80_01720) aroB 364190..365272 (+) 1083 WP_032006366.1 3-dehydroquinate synthase -
  SOI80_RS01725 (SOI80_01725) - 365289..366158 (+) 870 WP_032006365.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19265.32 Da        Isoelectric Point: 9.0270

>NTDB_id=908553 SOI80_RS01705 WP_002116864.1 360864..361391(+) (pilP) [Acinetobacter pittii strain HCG62]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=908553 SOI80_RS01705 WP_002116864.1 360864..361391(+) (pilP) [Acinetobacter pittii strain HCG62]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCCGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGAGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCAACAAATTGAGCGAGTGCAGGTAGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATTTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709