Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SOI69_RS16815 Genome accession   NZ_CP139248
Coordinates   3572186..3574336 (+) Length   716 a.a.
NCBI ID   WP_320539675.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3567186..3579336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS16795 (SOI69_16795) pilM 3569137..3570195 (+) 1059 WP_320539674.1 pilus assembly protein PilM Machinery gene
  SOI69_RS16800 (SOI69_16800) pilN 3570195..3570836 (+) 642 WP_005067080.1 PilN domain-containing protein Machinery gene
  SOI69_RS16805 (SOI69_16805) pilO 3570833..3571585 (+) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI69_RS16810 (SOI69_16810) pilP 3571596..3572123 (+) 528 WP_068563956.1 pilus assembly protein PilP Machinery gene
  SOI69_RS16815 (SOI69_16815) pilQ 3572186..3574336 (+) 2151 WP_320539675.1 type IV pilus secretin PilQ Machinery gene
  SOI69_RS16820 (SOI69_16820) aroK 3574348..3574917 (+) 570 WP_320539676.1 shikimate kinase AroK -
  SOI69_RS16825 (SOI69_16825) aroB 3574946..3576028 (+) 1083 WP_017481728.1 3-dehydroquinate synthase -
  SOI69_RS16830 (SOI69_16830) - 3576045..3576914 (+) 870 WP_320539677.1 hypothetical protein -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 77629.92 Da        Isoelectric Point: 5.9122

>NTDB_id=908262 SOI69_RS16815 WP_320539675.1 3572186..3574336(+) (pilQ) [Acinetobacter pittii strain HCG18]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPMQITGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLIQSKV
AIKTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAVAKPVSASAMQTQGVSNIGFQRGSQGEGLIV
IDLLGGNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATSVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAHAQDIMSLITQGSNNSNGMQRTSDGGNSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGVNSNNNLLVGGSDTTLWNLREPDDDGKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVI
STPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPNITPDGKIQMKLDISKDSVSGAAPNGELIL
NKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPFFGDLPGIGRLFRKDQKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=908262 SOI69_RS16815 WP_320539675.1 3572186..3574336(+) (pilQ) [Acinetobacter pittii strain HCG18]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACTAATATTGTACCGATGCAAATAACGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCCTATCAGCTTGAGAATCCTTCACGTTTGATTTTAGATTTTAATAAAGCGCAGCAGAATTTAATACAGTCAAAAGTA
GCGATTAAAACGAATGAAGCGAGTTCGGTCGATGTAAGCTCCGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACTACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAAGCTGTAGCTAAACCTG
TATCAGCAAGTGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGCCTTATCGTT
ATTGACTTGTTGGGAGGTAATACCCCTGTTGATGTGCAACAACAAGGTAGCAAAGTTGTAGTAAGAACGTTAGGCTCTAA
AATTCCTACACATCTAGCTAAACGCTTAAATGTAAATGATTTTGCAACCTCTGTTTCGACAATTGAATCTTATAATGAAA
AAGGCAATGGCGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCAGAAAATAAATTAACCATT
AGTCTCAAGCGTCCGCAGGACAAAAATGTAACCTCTTTATATAAGACGCCTAATTACTCTGGTAATAAGCTTTCTCTCGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAGTTACTTGCTGATTTTACTGGTATTAATATGGTCGCGGCTGATAGTG
TGCAAGGTAATATCACTTTACGTTTAAAAGATGTACCATGGGACCAAGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGAAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCTGAAGAAGAAGAAGCAAAAGC
TGTTGCACAGAGCGTGAAATTAGCCCCATTACAAACTGAGTATATTCAACTTAAATATGCGCACGCTCAGGATATTATGA
GTTTAATTACTCAAGGCTCAAATAATAGCAATGGTATGCAGCGCACATCTGATGGTGGAAATTCTACATCTACTAATTTA
AATACTGGTGTTGATAGTTTAGGTAATAATGTAGGAAGTTTATTGAGTCCCCGTGGAACAATTACTCAAGATGATCGTAC
CAATACCTTAATTATTAATGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATCTGTTGGATGTACAAGTTA
AACAGGTTATGGTTGAGGCGCGAATTGTAAGAGCATCTACTTCTTTTACTAAAGAGCTCGGCGTTAAATGGGGAATACTA
TCCCAAGGGGTAAACAGTAATAATAATTTGCTGGTGGGTGGTAGTGATACAACGCTTTGGAATTTAAGAGAACCGGATGA
CGACGGGAAATACACGATTGAACGTCCAGATAACTTAAATGTCGATTTAGGTGTAACCAATCCGGCTGGGAGTATTGCCT
TTGGCTTGATTAGTATGTCTGATTTTATGCTTGATCTTGAACTTTCTGCATTACAAGCTGATGGCTATGGTGAGGTTATT
TCTACCCCTAAAGTAATGACTGCAGATAAACAGCCTGCAAAAGTTGCAACAGGTCAACAGGTCCCATATCAAACTACAAC
GAATTCTGCTGCTGGTGCTACAGCAAGTACCTCTTTTAAAGATGCACTATTAAGCCTAGATGTTACACCGAACATTACGC
CTGATGGTAAAATTCAAATGAAATTGGATATTTCAAAGGATTCGGTTTCGGGTGCGGCTCCTAATGGTGAATTGATCCTA
AATAAAAATAATATCAAGACAAATGTGTTGGTGAATAATGGTGAGACAGTCATTCTTGGTGGTGTTTTTGAGCAGACAAC
CCTTAACTCTCAAACCAAAGTTCCTTTCTTTGGGGATTTACCGGGAATTGGACGCCTATTTAGGAAAGATCAGAAATCTG
ATGATAAGCAAGAGTTACTGATTTTCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(550-708)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(38-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

90.014

100

0.906
  pilQ Acinetobacter baumannii strain A118

89.875

100

0.905
  comQ Acinetobacter baylyi ADP1

75.487

100

0.757
  pilQ Pseudomonas aeruginosa PAK

39.833

100

0.399