Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SOI69_RS16800 Genome accession   NZ_CP139248
Coordinates   3570195..3570836 (+) Length   213 a.a.
NCBI ID   WP_005067080.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3565195..3575836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS16780 (SOI69_16780) - 3565200..3565532 (+) 333 WP_320539672.1 hypothetical protein -
  SOI69_RS16785 (SOI69_16785) rrmA 3565535..3566359 (+) 825 WP_017400503.1 putative RNA methyltransferase -
  SOI69_RS16790 (SOI69_16790) ponA 3566414..3568975 (-) 2562 WP_320539673.1 penicillin-binding protein PBP1a -
  SOI69_RS16795 (SOI69_16795) pilM 3569137..3570195 (+) 1059 WP_320539674.1 pilus assembly protein PilM Machinery gene
  SOI69_RS16800 (SOI69_16800) pilN 3570195..3570836 (+) 642 WP_005067080.1 PilN domain-containing protein Machinery gene
  SOI69_RS16805 (SOI69_16805) pilO 3570833..3571585 (+) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI69_RS16810 (SOI69_16810) pilP 3571596..3572123 (+) 528 WP_068563956.1 pilus assembly protein PilP Machinery gene
  SOI69_RS16815 (SOI69_16815) pilQ 3572186..3574336 (+) 2151 WP_320539675.1 type IV pilus secretin PilQ Machinery gene
  SOI69_RS16820 (SOI69_16820) aroK 3574348..3574917 (+) 570 WP_320539676.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23908.31 Da        Isoelectric Point: 5.1162

>NTDB_id=908259 SOI69_RS16800 WP_005067080.1 3570195..3570836(+) (pilN) [Acinetobacter pittii strain HCG18]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLDDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=908259 SOI69_RS16800 WP_005067080.1 3570195..3570836(+) (pilN) [Acinetobacter pittii strain HCG18]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAGATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGACGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAACGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.671

100

0.897
  comN Acinetobacter baylyi ADP1

71.078

95.775

0.681