Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SOI69_RS16810 Genome accession   NZ_CP139248
Coordinates   3571596..3572123 (+) Length   175 a.a.
NCBI ID   WP_068563956.1    Uniprot ID   A0AAW8QDV9
Organism   Acinetobacter pittii strain HCG18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3566596..3577123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS16795 (SOI69_16795) pilM 3569137..3570195 (+) 1059 WP_320539674.1 pilus assembly protein PilM Machinery gene
  SOI69_RS16800 (SOI69_16800) pilN 3570195..3570836 (+) 642 WP_005067080.1 PilN domain-containing protein Machinery gene
  SOI69_RS16805 (SOI69_16805) pilO 3570833..3571585 (+) 753 WP_060464993.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI69_RS16810 (SOI69_16810) pilP 3571596..3572123 (+) 528 WP_068563956.1 pilus assembly protein PilP Machinery gene
  SOI69_RS16815 (SOI69_16815) pilQ 3572186..3574336 (+) 2151 WP_320539675.1 type IV pilus secretin PilQ Machinery gene
  SOI69_RS16820 (SOI69_16820) aroK 3574348..3574917 (+) 570 WP_320539676.1 shikimate kinase AroK -
  SOI69_RS16825 (SOI69_16825) aroB 3574946..3576028 (+) 1083 WP_017481728.1 3-dehydroquinate synthase -
  SOI69_RS16830 (SOI69_16830) - 3576045..3576914 (+) 870 WP_320539677.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19274.33 Da        Isoelectric Point: 9.0286

>NTDB_id=908261 SOI69_RS16810 WP_068563956.1 3571596..3572123(+) (pilP) [Acinetobacter pittii strain HCG18]
MKLKQFSLSILACLALAGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNSRGQVMALIQTPDHQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=908261 SOI69_RS16810 WP_068563956.1 3571596..3572123(+) (pilP) [Acinetobacter pittii strain HCG18]
ATGAAACTTAAACAATTTTCTCTTTCTATTTTGGCATGTTTAGCTTTAGCTGGATGCGACTCTAGAATCGATGCTGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCCATAGAACCAGCGCCTGTTTTTACGCCTGTGCCACAATTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCGGGGAAACGA
GTATATCCGAATTTCTCACGAGCACCACAGCCACTCGAAAGCTATGCATTAGAGTCCTTAAATATGAAAGGAAGTATGCG
TAACAGCCGCGGGCAAGTCATGGCTCTGATCCAAACACCTGATCATCAAATTGAGCGAGTACAGGTAGGGAATTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCTACTCAGATTGATCTGGTGGAGATTGTCCCTGATGGGCGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88

100

0.88
  comL Acinetobacter baylyi ADP1

75.152

94.286

0.709