Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   SON02_RS09015 Genome accession   NZ_CP139211
Coordinates   2066961..2067665 (+) Length   234 a.a.
NCBI ID   WP_135027260.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2061961..2072665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS09005 (SON02_08985) thrS 2062307..2064253 (+) 1947 WP_135027264.1 threonine--tRNA ligase -
  SON02_RS09010 (SON02_08990) - 2065075..2066115 (+) 1041 WP_135027262.1 DUF3114 domain-containing protein -
  SON02_RS09015 (SON02_08995) micA 2066961..2067665 (+) 705 WP_135027260.1 response regulator YycF Regulator
  SON02_RS09020 (SON02_09000) micB 2067658..2069010 (+) 1353 WP_135027258.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SON02_RS09025 (SON02_09005) vicX 2069017..2069820 (+) 804 WP_135027255.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26853.88 Da        Isoelectric Point: 4.9925

>NTDB_id=908081 SON02_RS09015 WP_135027260.1 2066961..2067665(+) (micA) [Streptococcus sp. LysM4]
MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALAVFEAEFPDIVILDLMLPEIDGLEVARTIRKTSNVPILMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELAETQVELDTTGTPELTIRDLIIIPDAFVAKKHGKELELT
HREFELLHHLAKHLGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYIKGND

Nucleotide


Download         Length: 705 bp        

>NTDB_id=908081 SON02_RS09015 WP_135027260.1 2066961..2067665(+) (micA) [Streptococcus sp. LysM4]
ATGAAAAAAATCTTGATTGTAGACGATGAAAAGCCGATTTCGGATATTATCAAATTTAATATGACACGAGAGGGGTATGA
GGTGGTGACGGCTTTTGATGGTCGAGAAGCCTTGGCGGTATTTGAGGCGGAATTCCCAGATATCGTGATTTTGGACTTGA
TGCTTCCAGAGATTGATGGACTTGAAGTGGCACGGACCATTCGCAAGACCAGTAACGTGCCGATTTTGATGCTGTCTGCT
AAGGATAGCGAATTTGACAAGGTGATTGGTCTTGAAATTGGAGCAGATGATTATGTAACCAAACCCTTTTCGAATCGAGA
ATTGCAAGCTCGGGTCAAAGCCTTGTTGCGTCGCAGTGAATTGGCTGAAACGCAAGTTGAGCTGGATACGACTGGTACAC
CTGAGTTGACCATTCGGGATTTGATAATTATTCCAGATGCCTTTGTGGCTAAAAAGCATGGTAAGGAGTTGGAGTTGACC
CACCGTGAATTTGAGTTGCTCCACCATTTAGCTAAGCATTTGGGGCAGGTCATGACACGGGAGCATTTGCTTGAAACTGT
ATGGGGTTACGATTACTTCGGAGATGTGCGGACTGTTGACGTGACTGTTCGTCGCTTGCGTGAGAAAATTGAAGATACAC
CGAGCCGTCCGGAATATATCTTGACACGGCGTGGCGTAGGATATTATATAAAAGGAAATGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

83.333

100

0.833
  vicR Streptococcus mutans UA159

80.426

100

0.808
  covR Streptococcus salivarius strain HSISS4

43.29

98.718

0.427
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.043

98.291

0.423
  scnR Streptococcus mutans UA159

36.797

98.718

0.363