Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   SON02_RS09020 Genome accession   NZ_CP139211
Coordinates   2067658..2069010 (+) Length   450 a.a.
NCBI ID   WP_135027258.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2062658..2074010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS09010 (SON02_08990) - 2065075..2066115 (+) 1041 WP_135027262.1 DUF3114 domain-containing protein -
  SON02_RS09015 (SON02_08995) micA 2066961..2067665 (+) 705 WP_135027260.1 response regulator YycF Regulator
  SON02_RS09020 (SON02_09000) micB 2067658..2069010 (+) 1353 WP_135027258.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SON02_RS09025 (SON02_09005) vicX 2069017..2069820 (+) 804 WP_135027255.1 MBL fold metallo-hydrolase Regulator
  SON02_RS09030 (SON02_09010) pbp2b 2070908..2072983 (+) 2076 WP_209304548.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 51346.50 Da        Isoelectric Point: 4.6344

>NTDB_id=908082 SON02_RS09020 WP_135027258.1 2067658..2069010(+) (micB) [Streptococcus sp. LysM4]
MINQLRYLITTPEFWFVVILIGFVIALTVLLIENHRDNQQIKELNQKVKRLIELDYSDVLDMRGSPEITEMANSLNDLSE
VIRLTHDHLEQEKTRLSSILAYMSDGVMATDRRGRVIMVNETAQKQLGLSSKTLEQRDLLEILGIHEEYRFRDLLAQTPE
IVIDHDNENGEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDDGALT
DPVAPSFVKVSLDETNRMMRMISDLLSLSRIDNQVSSADVELINFTAFVTFILNRFEQMKSQQDTGKEYVIVRDYQITPI
WIEIDTDKMTQVMDNILDNAIKYSPDGGKITFSMKTTDSQLIVSISDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGL
GLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLPYIKDMSADEWEDAEEEE

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=908082 SON02_RS09020 WP_135027258.1 2067658..2069010(+) (micB) [Streptococcus sp. LysM4]
ATGATTAATCAATTACGATATTTAATAACGACACCTGAGTTTTGGTTTGTGGTCATCTTGATTGGTTTTGTCATTGCATT
GACGGTCTTATTGATTGAAAACCACCGAGATAATCAGCAAATCAAGGAACTCAATCAAAAGGTTAAACGCTTGATTGAGC
TGGACTATTCAGATGTTCTTGATATGCGGGGGAGCCCTGAAATTACAGAAATGGCTAATTCGCTCAATGATTTGTCAGAA
GTTATTAGGCTGACCCACGACCATTTGGAGCAGGAAAAGACGCGTCTGTCCTCCATTCTTGCCTATATGAGTGACGGTGT
AATGGCCACAGACCGCAGGGGTCGGGTCATCATGGTCAATGAAACAGCCCAAAAGCAGTTGGGGCTTTCTTCAAAAACGC
TGGAACAGCGTGATTTGCTAGAAATCTTGGGAATTCATGAAGAGTATCGCTTTCGAGATTTGCTAGCGCAGACACCTGAG
ATTGTCATTGATCATGATAATGAAAACGGTGAATTTTTGACCTTGCGGGCGAATTTTGCGACCATTCGCAGTGAGAGTGG
CTTGATTTCAGGTCTTGTTGTCGTGCTGCACGATATGACCGAGCAGGCTAAGGAAGAGCGGGAGCGACGCCTATTTGTTT
CAAATGTCAGCCATGAGTTGAGAACACCGTTGACATCGGTTAAATCTTATCTGGAAGCCCTTGATGACGGGGCCTTGACG
GATCCAGTTGCGCCTAGCTTTGTTAAGGTATCGCTTGATGAAACCAATCGTATGATGCGAATGATCTCTGATTTGCTGAG
CCTGTCACGGATTGACAATCAAGTCAGTTCAGCTGATGTGGAGTTAATTAACTTTACAGCCTTTGTGACGTTTATCTTAA
ATCGCTTTGAACAGATGAAGAGCCAGCAGGATACAGGTAAGGAATATGTTATTGTCCGTGATTATCAGATTACACCGATT
TGGATTGAGATTGATACAGACAAGATGACCCAGGTCATGGACAATATTTTAGACAATGCCATTAAGTATTCACCAGACGG
TGGCAAGATTACCTTTAGCATGAAGACGACAGATAGTCAGTTGATAGTTTCTATTTCTGATGAGGGATTAGGAATTCCCA
AGGCTGATTTGCCAAGAATTTTTGACCGTTTTTATCGGGTGGATAAGGCTCGTTCACGAGCGCAAGGTGGTACAGGACTT
GGTCTTGCGATTGCTAAGGAAATTGTCAAGCAACACAAGGGCTTTATCTGGGCCAAGAGTGAATATGGACATGGCTCAAC
TTTCACCATTGTTCTGCCTTATATTAAGGACATGTCAGCTGATGAGTGGGAGGATGCAGAAGAGGAAGAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(325-433)

PAS fold (PAS)

(95-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

70.481

97.111

0.684
  vicK Streptococcus mutans UA159

68.227

90.222

0.616