Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SON02_RS09025 Genome accession   NZ_CP139211
Coordinates   2069017..2069820 (+) Length   267 a.a.
NCBI ID   WP_135027255.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2064017..2074820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS09010 (SON02_08990) - 2065075..2066115 (+) 1041 WP_135027262.1 DUF3114 domain-containing protein -
  SON02_RS09015 (SON02_08995) micA 2066961..2067665 (+) 705 WP_135027260.1 response regulator YycF Regulator
  SON02_RS09020 (SON02_09000) micB 2067658..2069010 (+) 1353 WP_135027258.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SON02_RS09025 (SON02_09005) vicX 2069017..2069820 (+) 804 WP_135027255.1 MBL fold metallo-hydrolase Regulator
  SON02_RS09030 (SON02_09010) pbp2b 2070908..2072983 (+) 2076 WP_209304548.1 penicillin-binding protein PBP2B -
  SON02_RS09035 (SON02_09015) recR 2073966..2074562 (+) 597 WP_135027253.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29549.44 Da        Isoelectric Point: 5.3445

>NTDB_id=908083 SON02_RS09025 WP_135027255.1 2069017..2069820(+) (vicX) [Streptococcus sp. LysM4]
MGETGFRYSILASGSSGNSFYLETEKKKILVDAGLSGKKIASLLAEIDRRPEQLDAILVTHEHSDHIHGIGVLARKYGMD
IYANEATWQAMEGKLGPIALEQKHIFELGVTKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRLAGIV
ENADGYLIESNHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRTLGNRTKRIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQIYDTSPDTATPLTAM

Nucleotide


Download         Length: 804 bp        

>NTDB_id=908083 SON02_RS09025 WP_135027255.1 2069017..2069820(+) (vicX) [Streptococcus sp. LysM4]
ATGGGAGAAACAGGATTTCGATATAGTATTTTAGCCTCTGGTTCTAGTGGAAACTCCTTTTATTTAGAAACAGAGAAGAA
AAAGATTTTAGTAGATGCTGGTTTGTCTGGGAAGAAGATAGCCAGTTTATTAGCAGAAATTGACCGCAGACCTGAGCAGT
TGGATGCCATTTTGGTCACGCATGAGCATAGCGATCATATCCACGGGATCGGTGTTTTGGCTCGCAAATATGGTATGGAT
ATCTATGCCAATGAGGCGACCTGGCAAGCTATGGAAGGAAAATTAGGTCCAATTGCTCTGGAGCAAAAGCATATTTTTGA
ATTGGGTGTGACAAAGACCTTTGGCGATTTGGATATTGAAAGTTTTGGGGTCAGTCACGATGCAGCTTGTCCGCAATTTT
ATCGTTTTATGAAAGATGACAAGAGTTTTGTCATGCTGACGGATACAGGCTATGTCAGTGATCGTCTAGCAGGGATTGTG
GAAAATGCTGACGGATACCTCATTGAGTCCAATCACGATGTGGAAATTTTGCGGGCAGGTTCTTATTCATGGAATCTCAA
GCAGCGGATTTTGTCAGATAAGGGGCACCTTTGTAATGAGGACGGAGCAGATGCTATGATTCGAACTCTGGGAAACCGAA
CCAAGAGGATTTACTTAGGGCACCTCAGTAAGGAAAATAACATCAAGGAATTGGCTCATATGACCATGGTCAATCAACTA
GCCCAAGCAGATTTAGGAGTAGGTGTAGATTTTCAGATTTACGATACATCGCCAGACACAGCAACACCCCTAACGGCAAT
GTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772