Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SK095_RS18360 Genome accession   NZ_CP139195
Coordinates   3896299..3898422 (+) Length   707 a.a.
NCBI ID   WP_320547088.1    Uniprot ID   -
Organism   Pseudomonas sp. AN-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3891299..3903422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK095_RS18340 (SK095_18340) comM 3893445..3894509 (+) 1065 WP_136491091.1 pilus assembly protein PilM Machinery gene
  SK095_RS18345 (SK095_18345) - 3894509..3895099 (+) 591 WP_320547086.1 PilN domain-containing protein -
  SK095_RS18350 (SK095_18350) pilO 3895096..3895716 (+) 621 WP_320547087.1 type 4a pilus biogenesis protein PilO -
  SK095_RS18355 (SK095_18355) pilP 3895716..3896243 (+) 528 WP_320548924.1 type 4a pilus biogenesis lipoprotein PilP -
  SK095_RS18360 (SK095_18360) pilQ 3896299..3898422 (+) 2124 WP_320547088.1 type IV pilus secretin PilQ Machinery gene
  SK095_RS18365 (SK095_18365) aroK 3898426..3898944 (+) 519 WP_320547089.1 shikimate kinase AroK -
  SK095_RS18370 (SK095_18370) aroB 3899043..3900140 (+) 1098 WP_320547090.1 3-dehydroquinate synthase -
  SK095_RS18375 (SK095_18375) - 3900202..3901839 (+) 1638 WP_320547091.1 AAA family ATPase -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76420.73 Da        Isoelectric Point: 4.7287

>NTDB_id=907821 SK095_RS18360 WP_320547088.1 3896299..3898422(+) (pilQ) [Pseudomonas sp. AN-1]
MNTCISRFSLSLLAALLSPVALAANLQGLDVAALPGDRVELKLAFDEPVAAPRGYTIDQPARIALDLPGVSNRLGSRNRE
LGVGNARSLTVVEAKDRTRLIINLNSQAPYSTRVEGNNLFVVVGGSSAAAAGSVSAAPAAAVRPLAQAPQPFVPAGKAIR
NIDFQRGEQGEGNVVIDLSEAGISPDIQESGGRIRLEFPRTLLPEQLRARLDVKDFATPVQFVNASVSGDKATIVIEPSG
HYDYLAYQTDNRLTISVKPLTQADVEKRKGERFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELEAQKQIAELAPLRREVLQLNYAKASDIAGLFKEYSESAE
QKDMRGSLIYDDRTNSLIAHLTEERLDELRRIVTQLDIPVRQVMIEARIVEATVGYDKSLGVRWGGAFYGDDKWTVYGKD
GARTIDDDGVLRLPGSSTIGNFEAEEGTAPVPFVDMGVLDSTSGLGIGFITDNVILDLQLSAMEASGNGEVISQPKVVTS
DKETAKILKGSEVPYQEASSSGATTIAFKEAALALEVTPQITPDNRVVMEVKVTKDAPDFSKSVNGVPPIDKNEVNAKVL
AADGETIVIGGVFSNTQTRSVEKVPFLGDLPFLGRLFRRDSVSDSKSELLIFLTPRIMDTQAISVSR

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=907821 SK095_RS18360 WP_320547088.1 3896299..3898422(+) (pilQ) [Pseudomonas sp. AN-1]
ATGAACACTTGCATTTCGCGCTTCAGCCTGTCGCTGCTGGCGGCGCTGCTTTCGCCGGTGGCCCTGGCCGCCAACCTGCA
GGGGCTCGATGTGGCGGCCCTGCCCGGGGACCGGGTCGAGCTGAAACTGGCCTTCGACGAGCCGGTGGCCGCCCCGCGTG
GCTATACCATCGACCAGCCGGCGCGCATAGCCCTGGACCTGCCGGGAGTCAGCAACAGGCTCGGTTCGCGCAATCGCGAA
CTGGGCGTCGGCAATGCCCGTAGCCTGACCGTGGTCGAGGCCAAGGATCGTACCCGGCTGATCATCAACCTCAACAGCCA
GGCGCCCTACAGCACGCGCGTCGAGGGCAACAACCTGTTCGTCGTGGTCGGCGGCTCGTCGGCGGCCGCCGCCGGCAGCG
TCAGTGCGGCCCCGGCGGCGGCAGTCCGGCCGCTGGCCCAGGCTCCGCAGCCGTTCGTGCCGGCCGGCAAGGCGATCCGC
AACATCGATTTCCAGCGCGGCGAGCAGGGCGAAGGCAACGTCGTCATCGACCTGTCCGAGGCCGGTATCTCGCCCGACAT
CCAGGAGAGTGGCGGCAGGATCCGCCTCGAGTTTCCGCGCACTCTGTTGCCCGAGCAGTTGCGCGCGCGCCTGGACGTGA
AGGATTTCGCCACCCCGGTGCAGTTCGTCAACGCCTCCGTCAGCGGCGACAAGGCCACCATCGTCATCGAGCCGAGCGGC
CATTACGACTACCTCGCCTACCAGACCGACAACCGGCTGACCATCAGCGTCAAGCCGCTGACCCAGGCGGATGTGGAGAA
GCGCAAGGGCGAGCGCTTCGCCTATACCGGCGAGAAACTGTCGCTGAACTTCCAGGATATCGACGTGCGCTCGGTGCTGC
AGCTGATCGCCGATTTCACCGACCTCAACCTGGTGGCCAGCGACACCGTGCAGGGCAACATCACCCTGCGTCTGCAGAAC
GTACCCTGGGATCAGGCGCTGGATCTGGTGCTGAAGACCAAGGGCCTGGACAAGCGCAAGATCGGCAACGTGCTGCTGGT
GGCGCCGGCCGACGAGATCGCCGCCCGCGAGCGCCAGGAACTGGAGGCGCAGAAGCAGATCGCCGAACTGGCACCGCTGC
GCCGTGAAGTGCTGCAGCTCAACTATGCGAAGGCTTCGGATATCGCCGGTCTGTTCAAGGAATACTCCGAGAGTGCCGAG
CAGAAGGACATGCGCGGTTCGCTGATCTACGACGATCGCACCAACAGCCTGATCGCCCACCTGACCGAGGAGCGCCTGGA
CGAGCTGCGCCGCATCGTCACCCAGCTGGACATCCCGGTGCGCCAGGTGATGATCGAGGCGCGCATCGTCGAGGCCACCG
TCGGCTACGACAAGAGCCTGGGGGTACGCTGGGGGGGGGCCTTCTATGGGGATGACAAGTGGACCGTCTACGGCAAGGAC
GGGGCAAGAACGATCGATGATGACGGTGTCCTGAGGCTTCCTGGAAGCAGCACGATTGGCAATTTTGAGGCAGAGGAGGG
GACGGCTCCGGTTCCCTTTGTCGATATGGGTGTGTTGGACAGCACGTCCGGCCTCGGCATCGGCTTCATCACCGACAACG
TGATCCTCGATCTGCAGCTGTCCGCCATGGAGGCCAGCGGCAACGGCGAGGTGATCTCGCAACCCAAGGTGGTCACCTCG
GACAAGGAGACGGCGAAGATCCTCAAGGGCTCGGAAGTGCCCTATCAGGAGGCCAGCTCCAGCGGCGCCACCACCATCGC
GTTCAAGGAAGCGGCGCTGGCCCTGGAGGTGACCCCGCAGATCACCCCGGACAACCGGGTGGTCATGGAGGTCAAGGTGA
CCAAGGATGCGCCCGACTTCTCCAAGTCGGTCAACGGCGTTCCGCCGATCGACAAGAACGAGGTCAACGCCAAGGTGCTG
GCCGCGGATGGCGAGACCATCGTCATCGGCGGGGTGTTCTCCAATACCCAGACGCGCTCGGTGGAGAAGGTACCGTTTCT
CGGCGATCTGCCGTTCCTCGGCCGCTTGTTCCGCCGCGATTCGGTCAGCGATTCGAAATCCGAGCTGCTGATCTTCCTCA
CCCCGCGTATCATGGACACCCAGGCAATTTCGGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(542-699)

Secretin and TonB N terminus short domain (STN)

(303-349)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-442)

AMIN domain (AMIN)

(39-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.427

100

0.743
  comQ Acinetobacter baylyi ADP1

40.552

100

0.416
  pilQ Acinetobacter baumannii strain A118

38.349

100

0.407
  pilQ Acinetobacter baumannii D1279779

38.349

100

0.407
  pilQ Legionella pneumophila strain ERS1305867

36.481

98.868

0.361
  pilQ Legionella pneumophila strain Lp02

36.481

98.868

0.361