Detailed information NTG0907820

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: SK095_RS18340
• Genome accession: NZ_CP139195
• Coordinates: 3893445..3894509 (+)
• Length: 354 a.a.
• NCBI ID: WP_136491091.1
• Uniprot ID: A0A8H8XJS4
• Organism: Pseudomonas sp. AN-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3888445..3899509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SK095_RS18325 (SK095_18325)	-	3888515..3889342 (+)	828	WP_320547084.1	thermonuclease family protein	-
SK095_RS18330 (SK095_18330)	-	3889524..3890792 (+)	1269	WP_136491093.1	malic enzyme-like NAD(P)-binding protein	-
SK095_RS18335 (SK095_18335)	-	3890852..3893263 (-)	2412	WP_320547085.1	penicillin-binding protein 1A	-
SK095_RS18340 (SK095_18340)	comM	3893445..3894509 (+)	1065	WP_136491091.1	pilus assembly protein PilM	Machinery gene
SK095_RS18345 (SK095_18345)	-	3894509..3895099 (+)	591	WP_320547086.1	PilN domain-containing protein	-
SK095_RS18350 (SK095_18350)	pilO	3895096..3895716 (+)	621	WP_320547087.1	type 4a pilus biogenesis protein PilO	-
SK095_RS18355 (SK095_18355)	pilP	3895716..3896243 (+)	528	WP_320548924.1	type 4a pilus biogenesis lipoprotein PilP	-
SK095_RS18360 (SK095_18360)	pilQ	3896299..3898422 (+)	2124	WP_320547088.1	type IV pilus secretin PilQ	Machinery gene
SK095_RS18365 (SK095_18365)	aroK	3898426..3898944 (+)	519	WP_320547089.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37982.50 Da
• Isoelectric Point: 4.4343

>NTDB_id=907820 SK095_RS18340 WP_136491091.1 3893445..3894509(+) (comM) [Pseudomonas sp. AN-1]
MLGLFNKTANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIAEIEGVGQALSRVLVKARTGVKNAAV
AVAGSAVITKSIEMDAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRNPERVEVLLAACRRENVEVREAALAL
AGLTPRVVDVEAYALERAYSLLEPRLAGERDELTVAVVDVGATMTTLSVLHNGKTIYIREQLFGGKQLTEEIQRRYGLSF
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQYSDVDCILLAGGTASLPDLDRLIQQKIGTPCVVANP
FADMALGSKVNAAALASDAPALMIACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=907820 SK095_RS18340 WP_136491091.1 3893445..3894509(+) (comM) [Pseudomonas sp. AN-1]
GTGCTAGGGCTCTTCAACAAGACCGCGAATACGCTATTGGGGATCGACATCAGCTCCACCTCGGTAAAGCTGCTGGAGCT
GAGCCGCTCGGGGGGGCGCTACAAGGTTGAGGCCTACGCGGTCGAGCCGTTGCCGCCGAATGCCGTCGTCGAGAAGAACA
TCGCCGAGATCGAGGGTGTCGGTCAGGCGCTGAGCCGCGTGCTGGTCAAGGCCCGCACCGGGGTCAAGAACGCGGCCGTG
GCCGTGGCTGGCTCGGCGGTGATCACCAAGAGCATCGAGATGGACGCCGGGCTGTCCGAGGACGAGCTGGAGAACCAGCT
GAAGATCGAGGCCGACCAGTACATCCCCTATCCCCTCGAGGAGGTGGCCATCGACTTCGAGGTCCAGGGCCCGGCGCCAC
GCAACCCCGAGCGGGTCGAGGTGCTGCTGGCGGCCTGCCGCCGGGAGAACGTCGAGGTGCGCGAGGCCGCCCTGGCTCTC
GCCGGCCTGACCCCTCGGGTAGTCGATGTCGAGGCCTATGCGCTGGAGCGCGCCTACTCGCTGCTCGAGCCGCGCCTGGC
GGGCGAGCGCGACGAGCTGACCGTGGCGGTGGTGGACGTCGGTGCGACCATGACCACCCTCAGCGTGCTGCACAACGGCA
AGACCATCTACATTCGTGAGCAGCTGTTCGGCGGCAAGCAGCTGACCGAGGAGATCCAGCGCCGCTACGGGCTGTCCTTC
GAGGAGGCCGGTCTGGCCAAGAAACAGGGTGGCCTGCCGGACGACTACGACAGCGAAGTGCTGCTGCCCTTCAAGGAGGC
CGTGGTGCAGCAGGTGTCGCGCTCGCTGCAGTTCTTCTTCGCCGCCGGCCAGTACAGCGACGTCGACTGCATCCTGCTGG
CCGGCGGTACGGCGTCCCTGCCGGATCTCGACCGGTTGATCCAGCAGAAGATCGGCACCCCCTGCGTGGTGGCCAACCCC
TTCGCCGACATGGCGCTGGGCAGCAAGGTGAATGCCGCGGCGCTGGCCAGCGATGCGCCGGCGCTGATGATCGCCTGCGG
CCTGGCGATGAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	55.932	100	0.559
pilM	Acinetobacter baumannii D1279779	55.65	100	0.557
comM	Acinetobacter baylyi ADP1	53.39	100	0.534
pilM	Legionella pneumophila strain ERS1305867	44.35	100	0.444