NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	SK061_RS22375	Genome accession	NZ_CP139190
Coordinates	4296357..4296929 (-)	Length	190 a.a.
NCBI ID	WP_006639372.1	Uniprot ID	M5P203
Organism	Bacillus sonorensis strain PMC204
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4291357..4301929

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SK061_RS22355 (SK061_22355)	-	4292111..4293409 (+)	1299	WP_006639369.1	hemolysin family protein	-
SK061_RS22360 (SK061_22360)	-	4293566..4294777 (+)	1212	WP_006639370.1	ammonium transporter	-
SK061_RS22365 (SK061_22365)	-	4294796..4295146 (+)	351	WP_006639371.1	P-II family nitrogen regulator	-
SK061_RS22370 (SK061_22370)	-	4295505..4295899 (+)	395	Protein_4375	hypothetical protein	-
SK061_RS22375 (SK061_22375)	clpP	4296357..4296929 (-)	573	WP_006639372.1	ATP-dependent Clp protease proteolytic subunit	Regulator
SK061_RS22380 (SK061_22380)	-	4296943..4297551 (-)	609	WP_006639373.1	sigma-70 family RNA polymerase sigma factor	-
SK061_RS22385 (SK061_22385)	-	4297684..4298556 (-)	873	WP_006639374.1	M23 family metallopeptidase	-
SK061_RS22390 (SK061_22390)	-	4298759..4299265 (+)	507	WP_029419621.1	GNAT family N-acetyltransferase	-
SK061_RS22395 (SK061_22395)	-	4299301..4299744 (-)	444	WP_006639376.1	YwnF family protein	-
SK061_RS22400 (SK061_22400)	cls	4299995..4301443 (+)	1449	WP_029419622.1	cardiolipin synthase	-

Sequence

Protein

Download Length: 190 a.a. Molecular weight: 21147.37 Da Isoelectric Point: 5.3555

                                >NTDB_id=907762 SK061_RS22375 WP_006639372.1 4296357..4296929(-) (clpP) [Bacillus sonorensis strain PMC204]

MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFTDDLANRVTAQLLFLSAEDDEKDISIYINSPGGSTSAGYAILDT

MEYVKPDIRTICVGMAASMGAILLAGGTKGKRYALKNSEIMIHQPLGGVKGQATDMEISARRIIKLKEKIQHFFHERTGQ

PLEKLKIDMERDYFMDAGEAKTYGIVDDIL

Nucleotide

Download Length: 573 bp

                                >NTDB_id=907762 SK061_RS22375 WP_006639372.1 4296357..4296929(-) (clpP) [Bacillus sonorensis strain PMC204]

ATGAACACCATTCCGTATGTCATAGAAAAAACAGCGGCGGGAGAAAGGTCTTACGACATTTTTTCAAGGCTCTTGAAAGA

CCGCATCATTATGATCGGCTCGGAATTTACGGACGATCTGGCCAATCGGGTTACCGCCCAATTGCTGTTTTTGTCAGCGG

AGGATGACGAAAAGGATATTTCGATTTATATCAACAGCCCCGGCGGTTCTACGTCAGCCGGATATGCGATTTTAGATACG

ATGGAATATGTGAAACCGGATATCCGCACGATCTGCGTCGGGATGGCGGCGTCAATGGGGGCGATCCTTCTTGCGGGCGG

AACAAAAGGAAAACGGTATGCTCTCAAAAACAGCGAAATCATGATCCATCAGCCGCTCGGCGGCGTCAAAGGCCAGGCGA

CAGACATGGAGATTTCCGCGAGGCGGATCATCAAGCTAAAGGAAAAAATACAGCACTTTTTCCATGAACGGACGGGGCAG

CCGCTTGAAAAACTAAAAATAGACATGGAACGCGACTATTTTATGGATGCCGGGGAAGCGAAGACATACGGCATCGTTGA

TGACATTTTGTGA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	M5P203

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	64.211	100	0.642
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	60.428	98.421	0.595
clpP	Streptococcus thermophilus LMG 18311	53.439	99.474	0.532
clpP	Streptococcus thermophilus LMD-9	53.439	99.474	0.532
clpP	Streptococcus pneumoniae D39	52.91	99.474	0.526
clpP	Streptococcus pneumoniae Rx1	52.91	99.474	0.526
clpP	Streptococcus pneumoniae R6	52.91	99.474	0.526
clpP	Streptococcus pneumoniae TIGR4	52.91	99.474	0.526
clpP	Streptococcus mutans UA159	51.852	99.474	0.516
clpP	Streptococcus pyogenes JRS4	51.852	99.474	0.516
clpP	Streptococcus pyogenes MGAS315	51.852	99.474	0.516
clpP	Lactococcus lactis subsp. cremoris KW2	51.323	99.474	0.511
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.265	99.474	0.5

Detailed information NTG0907762