Detailed information NTG0907756

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: SK061_RS21420
• Genome accession: NZ_CP139190
• Coordinates: 4100194..4100790 (+)
• Length: 198 a.a.
• NCBI ID: WP_006639184.1
• Uniprot ID: M5PBT9
• Organism: Bacillus sonorensis strain PMC204
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4095194..4105790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SK061_RS21395 (SK061_21395)	-	4095995..4096306 (+)	312	WP_046132526.1	hypothetical protein	-
SK061_RS21400 (SK061_21400)	-	4097003..4097332 (-)	330	WP_088272963.1	YolD-like family protein	-
SK061_RS21405 (SK061_21405)	-	4097750..4098517 (-)	768	WP_320549205.1	helix-turn-helix domain-containing protein	-
SK061_RS21410 (SK061_21410)	-	4098677..4099666 (-)	990	WP_257434570.1	tyrosine-type recombinase/integrase	-
SK061_RS21420 (SK061_21420)	clpP	4100194..4100790 (+)	597	WP_006639184.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
SK061_RS21425 (SK061_21425)	-	4100835..4101440 (-)	606	WP_006639185.1	DJ-1/PfpI family protein	-
SK061_RS21430 (SK061_21430)	-	4101469..4102044 (-)	576	WP_006639186.1	TIGR00730 family Rossman fold protein	-
SK061_RS21435 (SK061_21435)	-	4102155..4102484 (+)	330	WP_006639187.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
SK061_RS21440 (SK061_21440)	-	4102474..4103451 (+)	978	WP_006639188.1	HD domain-containing protein	-
SK061_RS21445 (SK061_21445)	-	4103496..4105115 (-)	1620	WP_006639189.1	SulP family inorganic anion transporter	-
SK061_RS21450 (SK061_21450)	-	4105139..4105732 (-)	594	WP_006639190.1	carbonic anhydrase	-

Sequence

Protein

• Length: 198 a.a.
• Molecular weight: 21834.02 Da
• Isoelectric Point: 4.7982

>NTDB_id=907756 SK061_RS21420 WP_006639184.1 4100194..4100790(+) (clpP) [Bacillus sonorensis strain PMC204]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILSERTGQ
PLEIIERDTDRDNFKTAEEAKEYGLIDKVLTRNIDAQK

Nucleotide

• Length: 597 bp

>NTDB_id=907756 SK061_RS21420 WP_006639184.1 4100194..4100790(+) (clpP) [Bacillus sonorensis strain PMC204]
ATGAATTTAATACCTACAGTCATTGAACAGACGAATCGCGGGGAAAGAGCTTATGACATCTACTCACGCCTGCTGAAAGA
CCGTATCATCATGCTGGGGTCAGCTATCGATGACAATGTTGCGAACTCCATTGTATCACAGCTTTTATTCCTTGAAGCTG
AAGATCCTGAAAAAGATATCAGCATTTACATTAACAGCCCGGGCGGTTCTATTACTGCCGGTATGGCGATCTATGACACG
ATGCAATTTATTAAACCGCAAGTTTCCACAATTTGCACGGGAATGGCGGCGTCCATGGGTGCATTCCTTCTTGCTGCCGG
TGAGAAAGGAAAACGCTATGCCCTTCCAAACAGTGAAGTGATGATTCACCAGCCGCTGGGCGGAGCGCAAGGCCAGGCGA
CTGAAATCGAAATCGCGGCAAAACGTATTCTTTCATTGCGCGACAAACTGAACAAAATCCTTTCTGAACGCACCGGCCAG
CCGCTCGAAATCATCGAGCGCGATACGGACCGCGACAACTTCAAAACAGCTGAAGAAGCCAAAGAATATGGCTTAATCGA
TAAAGTGCTGACGCGCAACATCGATGCGCAAAAGTAA

Domains

Predicted by InterproScan.

• Clp protease (CLP_protease) (13-192)

3D structure

• AlphaFold DB: M5PBT9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	91.371	99.495	0.909
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.708	96.97	0.657
clpP	Streptococcus thermophilus LMG 18311	57.513	97.475	0.561
clpP	Streptococcus thermophilus LMD-9	57.513	97.475	0.561
clpP	Streptococcus pneumoniae TIGR4	56.477	97.475	0.551
clpP	Streptococcus pneumoniae D39	56.477	97.475	0.551
clpP	Lactococcus lactis subsp. cremoris KW2	56.477	97.475	0.551
clpP	Streptococcus pneumoniae Rx1	56.477	97.475	0.551
clpP	Streptococcus pneumoniae R6	56.477	97.475	0.551
clpP	Streptococcus mutans UA159	55.155	97.98	0.54
clpP	Streptococcus pyogenes JRS4	54.922	97.475	0.535
clpP	Streptococcus pyogenes MGAS315	54.922	97.475	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.404	97.475	0.53