NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	ABNG15_RS04940	Genome accession	NZ_CP158022
Coordinates	1013319..1013960 (+)	Length	213 a.a.
NCBI ID	WP_367086655.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain CI00795
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1008319..1018960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNG15_RS04925 (ABNG15_04925)	parS	1009689..1010975 (-)	1287	WP_003087912.1	sensor histidine kinase ParS	-
ABNG15_RS04930 (ABNG15_04930)	parR	1010976..1011683 (-)	708	WP_003098126.1	response regulator transcription factor ParR	-
ABNG15_RS04935 (ABNG15_04935)	tig	1011915..1013225 (+)	1311	WP_003087920.1	trigger factor	-
ABNG15_RS04940 (ABNG15_04940)	clpP	1013319..1013960 (+)	642	WP_367086655.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
ABNG15_RS04945 (ABNG15_04945)	clpX	1014065..1015345 (+)	1281	WP_003087924.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ABNG15_RS04950 (ABNG15_04950)	lon	1015477..1017873 (+)	2397	WP_003124759.1	endopeptidase La	-
ABNG15_RS04955 (ABNG15_04955)	hupB	1018009..1018281 (+)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-

Sequence

Protein

Download Length: 213 a.a. Molecular weight: 23530.20 Da Isoelectric Point: 6.6019

                                >NTDB_id=906860 ABNG15_RS04940 WP_367086655.1 1013319..1013960(+) (clpP) [Pseudomonas aeruginosa strain CI00795]

MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGRASDIEIHAKEIL

FIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide

Download Length: 642 bp

                                >NTDB_id=906860 ABNG15_RS04940 WP_367086655.1 1013319..1013960(+) (clpP) [Pseudomonas aeruginosa strain CI00795]

ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC

CGCCCGCGGCGAGCGCGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG

ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC

AACTCGCCGGGTGGTTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC

CTGTATCGGCCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATT

CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCGGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC

TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG

TGACCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT

AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.188	90.141	0.606
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.263	89.202	0.582
clpP	Lactococcus lactis subsp. cremoris KW2	52.792	92.488	0.488
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.269	92.488	0.474
clpP	Streptococcus mutans UA159	50	92.019	0.46
clpP	Streptococcus pneumoniae R6	50.256	91.549	0.46
clpP	Streptococcus pneumoniae TIGR4	50.256	91.549	0.46
clpP	Streptococcus pyogenes JRS4	50.256	91.549	0.46
clpP	Streptococcus pyogenes MGAS315	50.256	91.549	0.46
clpP	Streptococcus thermophilus LMG 18311	50.256	91.549	0.46
clpP	Streptococcus thermophilus LMD-9	50.256	91.549	0.46
clpP	Streptococcus pneumoniae Rx1	50.256	91.549	0.46
clpP	Streptococcus pneumoniae D39	50.256	91.549	0.46

Detailed information NTG0906860