Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SJY35_RS05350 Genome accession   NZ_CP139001
Coordinates   1168606..1169832 (-) Length   408 a.a.
NCBI ID   WP_396588794.1    Uniprot ID   -
Organism   Bermanella sp. R86510     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1163606..1174832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJY35_RS05325 argJ 1165218..1166435 (+) 1218 WP_396588789.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  SJY35_RS05330 - 1166536..1166838 (+) 303 WP_396588790.1 NUDIX domain-containing protein -
  SJY35_RS05335 yacG 1166848..1167048 (-) 201 WP_396588791.1 DNA gyrase inhibitor YacG -
  SJY35_RS05340 coaE 1167045..1167662 (-) 618 WP_396588792.1 dephospho-CoA kinase -
  SJY35_RS05345 - 1167663..1168526 (-) 864 WP_396588793.1 prepilin peptidase -
  SJY35_RS05350 pilC 1168606..1169832 (-) 1227 WP_396588794.1 type II secretion system F family protein Machinery gene
  SJY35_RS05355 pilB 1169846..1171525 (-) 1680 WP_396588795.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SJY35_RS05360 - 1171656..1172111 (-) 456 WP_396588796.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  SJY35_RS05365 nadC 1172465..1173307 (-) 843 WP_396588797.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SJY35_RS05370 ampD 1173458..1174009 (+) 552 WP_396588798.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44126.91 Da        Isoelectric Point: 7.1445

>NTDB_id=906687 SJY35_RS05350 WP_396588794.1 1168606..1169832(-) (pilC) [Bermanella sp. R86510]
MAKVKTVTFQWEGANKRGQKVEGEMLSDNPALVKAQLRKQGITPKKVKRKSEGLFGIGRGQGKGKVKAADTTLFMRQLAT
MAKSGVPLMQGLEIVADGLENPAMQKVVLNVKDEVSAGNDFASCLKKHPEHFDTLTCALIESGEQSGALEQMLDRVALYK
EKSEALKQKVSKALKYPMVTLLIAAVVTIILLVKVVPTFEEMFSSFGSELPAPTQFVVDISEWLQANYLILIGSIVALVI
GLKEAIKRSPKLQEEKDKLMLKMPIIGEILKKSAVARFGRVLSTTFAAGVPLVDALDSVAEASGNVVYRDAILRIRDDVS
TGVQMNASIRATGVFPNMVAQMVAIGEESGALDAMLEKVATYYEDEVDNLVDGLTAMIEPLVMAFLGVVVGGLLIAMYLP
IFSMGDAM

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=906687 SJY35_RS05350 WP_396588794.1 1168606..1169832(-) (pilC) [Bermanella sp. R86510]
ATGGCAAAAGTGAAAACCGTTACATTTCAGTGGGAAGGTGCCAATAAGCGCGGCCAAAAAGTAGAAGGCGAAATGCTGAG
TGACAACCCGGCATTGGTTAAAGCACAACTGCGCAAACAAGGTATTACTCCTAAAAAAGTAAAACGCAAATCCGAAGGGC
TTTTTGGTATAGGCCGCGGCCAAGGTAAAGGCAAAGTCAAAGCCGCGGATACCACATTATTTATGCGCCAATTAGCTACC
ATGGCAAAATCCGGCGTACCCTTAATGCAAGGTTTAGAAATTGTTGCCGATGGTCTTGAAAACCCAGCCATGCAAAAAGT
GGTTTTAAATGTAAAAGATGAAGTCTCCGCCGGTAACGACTTTGCCTCATGCCTTAAAAAGCACCCTGAACATTTTGATA
CGCTCACTTGCGCATTAATTGAATCTGGCGAGCAATCTGGTGCCCTAGAGCAAATGCTTGACCGGGTAGCGCTTTATAAA
GAGAAATCAGAGGCGCTAAAACAAAAGGTATCTAAGGCACTGAAATACCCTATGGTTACGTTGCTTATTGCCGCCGTAGT
TACTATCATCCTGTTAGTCAAAGTAGTACCTACATTTGAAGAAATGTTTTCTAGCTTTGGTAGTGAGCTACCCGCGCCTA
CTCAATTTGTGGTTGATATATCAGAATGGTTGCAAGCCAATTATTTGATACTTATTGGTTCAATAGTTGCCCTCGTAATT
GGTTTAAAAGAAGCCATAAAGCGCAGCCCTAAATTACAAGAAGAAAAAGATAAGCTTATGCTTAAAATGCCCATTATTGG
TGAAATTCTTAAAAAGAGTGCGGTGGCACGTTTTGGGCGGGTTTTATCCACTACCTTCGCCGCGGGTGTACCTCTGGTTG
ATGCCCTAGATAGCGTAGCCGAAGCATCGGGCAATGTGGTGTACCGCGATGCCATATTGCGCATTCGTGATGATGTATCA
ACCGGTGTGCAAATGAATGCATCCATTCGTGCAACTGGAGTTTTCCCTAATATGGTGGCACAAATGGTGGCTATCGGTGA
AGAATCCGGTGCCCTTGATGCCATGTTAGAAAAGGTCGCAACTTACTATGAAGACGAGGTGGATAACCTAGTTGATGGCT
TAACCGCCATGATTGAACCATTGGTTATGGCTTTTTTAGGCGTAGTGGTAGGTGGTCTACTGATTGCTATGTACTTACCT
ATATTCTCCATGGGCGATGCTATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(280-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

58.955

98.529

0.581
  pilC Pseudomonas stutzeri DSM 10701

58.706

98.529

0.578
  pilC Acinetobacter baylyi ADP1

58.438

97.304

0.569
  pilC Legionella pneumophila strain ERS1305867

48.756

98.529

0.48
  pilC Vibrio cholerae strain A1552

44.444

97.059

0.431
  pilG Neisseria meningitidis 44/76-A

42.5

98.039

0.417
  pilC Vibrio campbellii strain DS40M4

42.821

97.304

0.417
  pilG Neisseria gonorrhoeae MS11

42.25

98.039

0.414