Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SIC15_RS04100 Genome accession   NZ_CP138917
Coordinates   900531..902597 (+) Length   688 a.a.
NCBI ID   WP_412537125.1    Uniprot ID   -
Organism   Marinobacter sp. MIT932201     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 895531..907597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC15_RS04080 pilM 897679..898740 (+) 1062 WP_008170799.1 pilus assembly protein PilM Machinery gene
  SIC15_RS04085 - 898740..899303 (+) 564 WP_412537122.1 PilN domain-containing protein -
  SIC15_RS04090 - 899303..899914 (+) 612 WP_412537123.1 type 4a pilus biogenesis protein PilO -
  SIC15_RS04095 - 899917..900465 (+) 549 WP_412537124.1 pilus assembly protein PilP -
  SIC15_RS04100 pilQ 900531..902597 (+) 2067 WP_412537125.1 type IV pilus secretin PilQ Machinery gene
  SIC15_RS04105 ltrA 903022..904389 (+) 1368 WP_053115127.1 group II intron reverse transcriptase/maturase -
  SIC15_RS04110 aroK 904568..905134 (+) 567 WP_412537126.1 shikimate kinase AroK -
  SIC15_RS04115 aroB 905127..906221 (+) 1095 WP_412537127.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 688 a.a.        Molecular weight: 74033.94 Da        Isoelectric Point: 4.2758

>NTDB_id=905876 SIC15_RS04100 WP_412537125.1 900531..902597(+) (pilQ) [Marinobacter sp. MIT932201]
MFRKLNVYVSVIAFGLLSGLANAVTLEDVSFSSLPGERLEVTLQFDGAPPEPSGYTIERPARIAVDLRDTTSGLNSRSVP
LGSGNAQSMTVVETKDRTRLIFNLVELVPYETVRSGNSLVMTIGGQAGAVATTSTSSSAQSSSATGTVSSDALAGVDFRR
GKDGEGRVLVELGSSSTPVDLTERAGKIRLTMDGLEVPSNLRRRLDVTDFATPVTRIDTFVEDGNAVVEITSEGNYDYIA
YQSGSQFTVSVEELSQEEAESRREEKFPYTGDKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVGGSITLRLQNVPWDQA
LDLILKTKGLDKRQIGNVLLVAPADEIAAREKLELETNKQIAELAPVRLDIIQVNYAKAADIVALIKEDEELISDRGFVS
SDVRTNTISVRETAEKLDEIRRLVSTWDVPVRQVSIEARIVRAQTNVAENLGVRWGGAAYDVSGDNVFTVGGSQQSLQEA
RDAAAGNSNTITFPGALAVDLGVTGEGASSFAIGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTASIKSGEEIP
YQEASSSGATSVSFKEAVLSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPSINTNEVTTQVLVGNGETVVLGGIFQSE
VATQTTKTPFLGDIPYLGRIFKRTEHIDERSELLIFITPKIIKNDLLR

Nucleotide


Download         Length: 2067 bp        

>NTDB_id=905876 SIC15_RS04100 WP_412537125.1 900531..902597(+) (pilQ) [Marinobacter sp. MIT932201]
ATGTTCAGAAAACTCAATGTATACGTCAGCGTGATTGCTTTTGGGTTGTTATCCGGCCTGGCCAACGCGGTCACGCTGGA
AGACGTGTCGTTTTCCTCGCTACCGGGCGAGCGGCTTGAAGTCACACTGCAATTTGATGGGGCGCCACCGGAACCCTCTG
GGTATACCATTGAGCGTCCTGCTCGCATTGCGGTTGACCTTCGAGACACGACCAGTGGCCTTAACAGCCGGAGCGTTCCG
CTCGGCTCAGGCAACGCCCAGAGTATGACCGTAGTAGAAACCAAGGATCGCACACGGTTGATTTTCAATCTGGTTGAGTT
GGTGCCTTACGAAACGGTCCGTTCGGGCAACTCCCTGGTTATGACGATTGGCGGGCAAGCCGGGGCTGTTGCTACTACGT
CCACCTCTTCTTCGGCTCAAAGCAGCTCAGCTACGGGCACGGTGTCCTCCGACGCTCTTGCCGGGGTGGATTTTCGCCGT
GGCAAGGATGGTGAAGGTCGGGTTCTTGTCGAGCTGGGCAGCTCCAGCACACCGGTGGATCTGACCGAACGCGCTGGCAA
GATCCGCTTGACGATGGATGGGCTTGAAGTTCCATCGAACCTGCGTCGCCGGCTCGATGTGACTGATTTCGCCACCCCGG
TTACCCGTATCGACACCTTTGTCGAGGATGGCAATGCCGTGGTCGAGATCACCTCAGAGGGCAATTACGACTACATTGCT
TACCAGTCCGGCAGCCAGTTTACTGTGAGTGTCGAGGAGCTGAGCCAGGAAGAGGCGGAGTCTCGCAGGGAAGAGAAGTT
CCCGTACACCGGTGACAAGTTGTCCCTGAACTTCCAGGATATTGAAGTCCGGTCGGTCCTGCAGTTGATTGCCGACTTCA
CCGGTCTGAACCTCGTGGCAAGTGACACTGTCGGCGGTAGTATCACTCTACGCTTGCAGAATGTTCCCTGGGATCAGGCC
CTGGATCTGATTCTCAAGACTAAAGGCCTCGATAAACGTCAGATTGGCAACGTATTGCTGGTAGCGCCTGCCGATGAAAT
CGCGGCTCGCGAGAAGCTTGAGCTTGAGACGAACAAGCAAATCGCTGAACTGGCACCGGTCCGTCTCGACATTATTCAGG
TTAATTACGCCAAGGCGGCTGATATTGTTGCGTTGATCAAGGAAGACGAAGAGCTGATTTCCGATCGCGGCTTTGTCTCC
TCGGATGTGCGAACAAACACCATCAGCGTTCGTGAAACGGCCGAGAAACTTGACGAAATTCGCCGTCTGGTATCGACATG
GGACGTTCCGGTACGGCAGGTTTCTATCGAGGCCCGTATTGTGCGTGCGCAAACCAACGTTGCCGAGAACCTCGGTGTTC
GCTGGGGTGGCGCCGCTTACGATGTGAGTGGAGATAATGTATTTACCGTAGGTGGTTCGCAGCAATCTCTGCAGGAAGCG
CGGGACGCGGCTGCCGGAAACAGCAACACCATCACCTTCCCGGGCGCCCTGGCGGTTGACCTCGGCGTGACAGGTGAGGG
CGCATCGTCCTTCGCCATCGGCTGGGGCAGCGATGACTTCCTGGTGGACCTCGAGCTGTCGGCTCTCGAGAGCGATGGTC
AGGCCGAAGTTGTCTCCCAACCCCGCGTTGTGACTGCTGATCGCCAGACGGCGTCTATCAAGTCTGGTGAGGAAATTCCC
TATCAGGAAGCGTCTTCGAGCGGTGCTACTTCTGTTTCTTTCAAGGAGGCCGTGCTCTCCCTTGAAGTCACTCCGCAGAT
TACGCCGGATGACAAGATCATCATGGATCTTGTGGTCAACCAGGACTCTCGTGGTGAGGTGACTGCTGGTATTCCATCAA
TCAATACCAATGAAGTGACCACCCAGGTTCTGGTTGGCAATGGTGAGACGGTTGTTCTGGGCGGCATTTTCCAGTCGGAA
GTGGCGACTCAGACTACCAAGACGCCGTTCCTTGGAGATATTCCCTACCTGGGTCGTATTTTCAAGCGTACCGAGCATAT
TGATGAGCGCAGCGAATTGTTGATCTTCATTACTCCGAAGATCATCAAGAACGACCTGCTTCGTTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-121)

Secretin and TonB N terminus short domain (STN)

(297-343)

Bacterial type II/III secretion system short domain (Secretin_N)

(371-433)

Bacterial type II and III secretion system protein (Secretin)

(528-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

48.942

100

0.504
  pilQ Acinetobacter baumannii D1279779

40.463

100

0.432
  pilQ Acinetobacter baumannii strain A118

40.463

100

0.432
  comQ Acinetobacter baylyi ADP1

40.736

100

0.419
  pilQ Legionella pneumophila strain Lp02

40.855

98.547

0.403
  pilQ Legionella pneumophila strain ERS1305867

40.855

98.547

0.403